| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124484852
Identifier: 124484852
GI number: 124484852
Start: 25122
End: 26621
Strand: Reverse
Name: 124484852
Synonym: Mlab_0023
Alternate gene names: NA
Gene position: 26621-25122 (Counterclockwise)
Preceding gene: 124484853
Following gene: 124484850
Centisome position: 1.47
GC content: 54.07
Gene sequence:
>1500_bases ATGGGGCTTGAGCGTTCGGTAGAGGATCAGGTCGCCGAGTCCTATTATAAAGCGAAGATCACCAGAGGCGTCGCCGACCG GACGTTTCGGACCTGGTTTTCAAAAGGGATCAAAGCCCCCGATCTTGCGAAGTGTGCCGAAGTCAGCGAAATGTACCTGA TCTATCTGCCGTTCTGGAGGTTCGTGGCCCAGGGAAAAGCCGTCGCCTGCGGATACTCCGAATACACCGAACAGACCGGC AATGTGATCAGGAACATCTTCGAGGAACTGATCGACGACGAGTTCATCTGGACGGAGTGTGCCTGCGATACCGGAAAATA CGGCATCGAAAAACTCTGGCTTGACCCAGGAGGGGAGGTTCCTTACGTAAGAGGGTCGGTCGTTTCGATGGAGCCGGGAG GATCCGCGATCGAGGCAAGCAAACGGGGAAGAGAAGCGGTCCATGAAATGATCAAGATCGCTGTCGAAAAACGAATCGAT AGGATCACGCTGAAAAAGTCGTTTCTGATTCCAAAAGTGTTCGAACTGGTGTATGCCCCTGTCTGGATAGCGCATTACTC CTATAAGGGAGGCCACTATACGGCGATCGTGGATGCCGTGCGCGGCGAGGTTTTAGGCGGGACAAGCCCGATCAATCTGA CCGCACGCACCCGGATGATGATCCTCTCCCTCGCTCTTGGAGGGATCATGATCGGTTCATCGGTCGCCATGCTCATTCAT ACAGGGCCGTATCAGCTGGCCGAGATGTTCCAGATCATCCTGCTTCTGCTGGGTATTGCCATGTGCATGGCGGGATATCC GGCATTCAAAGAGGGGAGGACCTTCGTCGCCACGGGAACGATGACGCATGTTGCGTCGCTTCGCCCCGCAGTAAGAGTGC CCAAACAGCTGACCGATCAGGAGATTCTGAACCATGACTCAACGATCCTGCAGTGCCCGCTCTGCGGGGAAGAAGTGGAG CAGCCTTGGGGAGAGGTTATCACCCCCTGCAAGAAATGCTCCCACCTGCTGGATATCACCGCAAATACGGTCAAAACAGT GCCCTACGATGTTGCCAAACCCGATCTTCTGGCAAAAGTAGCGATGGAGGGAGTGAAAGCCGACTTCATTCCATTCTGGC GGTTCGACGTGGACCTGGAAGTGACCGACAAGCTCACCGGCGGGGATACGACCACCGGCCTTCCCGATATTTCCGGTAAA CGCAGCTATTATATTTGTGCGGCCGATATCCCGCGGTATCTTGCCGAGCCCTGGGAGATCGATATGACGATTCGAAACCC CGAGATCGTCGAAGTCGTTGCCGGTTATGAAGGGAATTATATGCCGATCCTGATCAACAATAACACGGCACGGGAACTCA CGGAATTTCTGTATCTCCGCTACGAGACGGAAAAGCCGGGTATCCTGCAGGTCCTCAGATACAACTTCACGGTGGAAAAC TCGCGGATCGTCTATATCCCGTATTATAAAGAAGAGACATCATACATTCCGGGGATCTGA
Upstream 100 bases:
>100_bases AGTCCTTGGCTGTTTCTTCTGGTGGCAGCAGTTCTCATCTTTTTCCTGTATCAAAGCGAGATGCTCGGTATGATAAACCT CAAGCGCAGGGAGGGAAAAG
Downstream 100 bases:
>100_bases TACCGCGTCTGGACACTGATCTAAAAAACCGGATGTTTGACAGACCCGGGGTGCGGGAAAAAGAAAATATCCATTTGCCC CCGCCTCATTTATGGGAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MGLERSVEDQVAESYYKAKITRGVADRTFRTWFSKGIKAPDLAKCAEVSEMYLIYLPFWRFVAQGKAVACGYSEYTEQTG NVIRNIFEELIDDEFIWTECACDTGKYGIEKLWLDPGGEVPYVRGSVVSMEPGGSAIEASKRGREAVHEMIKIAVEKRID RITLKKSFLIPKVFELVYAPVWIAHYSYKGGHYTAIVDAVRGEVLGGTSPINLTARTRMMILSLALGGIMIGSSVAMLIH TGPYQLAEMFQIILLLLGIAMCMAGYPAFKEGRTFVATGTMTHVASLRPAVRVPKQLTDQEILNHDSTILQCPLCGEEVE QPWGEVITPCKKCSHLLDITANTVKTVPYDVAKPDLLAKVAMEGVKADFIPFWRFDVDLEVTDKLTGGDTTTGLPDISGK RSYYICAADIPRYLAEPWEIDMTIRNPEIVEVVAGYEGNYMPILINNNTARELTEFLYLRYETEKPGILQVLRYNFTVEN SRIVYIPYYKEETSYIPGI
Sequences:
>Translated_499_residues MGLERSVEDQVAESYYKAKITRGVADRTFRTWFSKGIKAPDLAKCAEVSEMYLIYLPFWRFVAQGKAVACGYSEYTEQTG NVIRNIFEELIDDEFIWTECACDTGKYGIEKLWLDPGGEVPYVRGSVVSMEPGGSAIEASKRGREAVHEMIKIAVEKRID RITLKKSFLIPKVFELVYAPVWIAHYSYKGGHYTAIVDAVRGEVLGGTSPINLTARTRMMILSLALGGIMIGSSVAMLIH TGPYQLAEMFQIILLLLGIAMCMAGYPAFKEGRTFVATGTMTHVASLRPAVRVPKQLTDQEILNHDSTILQCPLCGEEVE QPWGEVITPCKKCSHLLDITANTVKTVPYDVAKPDLLAKVAMEGVKADFIPFWRFDVDLEVTDKLTGGDTTTGLPDISGK RSYYICAADIPRYLAEPWEIDMTIRNPEIVEVVAGYEGNYMPILINNNTARELTEFLYLRYETEKPGILQVLRYNFTVEN SRIVYIPYYKEETSYIPGI >Mature_498_residues GLERSVEDQVAESYYKAKITRGVADRTFRTWFSKGIKAPDLAKCAEVSEMYLIYLPFWRFVAQGKAVACGYSEYTEQTGN VIRNIFEELIDDEFIWTECACDTGKYGIEKLWLDPGGEVPYVRGSVVSMEPGGSAIEASKRGREAVHEMIKIAVEKRIDR ITLKKSFLIPKVFELVYAPVWIAHYSYKGGHYTAIVDAVRGEVLGGTSPINLTARTRMMILSLALGGIMIGSSVAMLIHT GPYQLAEMFQIILLLLGIAMCMAGYPAFKEGRTFVATGTMTHVASLRPAVRVPKQLTDQEILNHDSTILQCPLCGEEVEQ PWGEVITPCKKCSHLLDITANTVKTVPYDVAKPDLLAKVAMEGVKADFIPFWRFDVDLEVTDKLTGGDTTTGLPDISGKR SYYICAADIPRYLAEPWEIDMTIRNPEIVEVVAGYEGNYMPILINNNTARELTEFLYLRYETEKPGILQVLRYNFTVENS RIVYIPYYKEETSYIPGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55962; Mature: 55831
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLERSVEDQVAESYYKAKITRGVADRTFRTWFSKGIKAPDLAKCAEVSEMYLIYLPFWR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEHHHHH FVAQGKAVACGYSEYTEQTGNVIRNIFEELIDDEFIWTECACDTGKYGIEKLWLDPGGEV HHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCEEEEECCCCCC PYVRGSVVSMEPGGSAIEASKRGREAVHEMIKIAVEKRIDRITLKKSFLIPKVFELVYAP CEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VWIAHYSYKGGHYTAIVDAVRGEVLGGTSPINLTARTRMMILSLALGGIMIGSSVAMLIH HHEEEEECCCCCEEEEHHHHHCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEE TGPYQLAEMFQIILLLLGIAMCMAGYPAFKEGRTFVATGTMTHVASLRPAVRVPKQLTDQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCHHHHCCHHHHHH EILNHDSTILQCPLCGEEVEQPWGEVITPCKKCSHLLDITANTVKTVPYDVAKPDLLAKV HHHCCCCCEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHH AMEGVKADFIPFWRFDVDLEVTDKLTGGDTTTGLPDISGKRSYYICAADIPRYLAEPWEI HHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCEEE DMTIRNPEIVEVVAGYEGNYMPILINNNTARELTEFLYLRYETEKPGILQVLRYNFTVEN EEEECCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHEEEECCCCCHHHHEEECEEECC SRIVYIPYYKEETSYIPGI CEEEEEEEECCCCCCCCCC >Mature Secondary Structure GLERSVEDQVAESYYKAKITRGVADRTFRTWFSKGIKAPDLAKCAEVSEMYLIYLPFWR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEHHHHH FVAQGKAVACGYSEYTEQTGNVIRNIFEELIDDEFIWTECACDTGKYGIEKLWLDPGGEV HHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCEEEEECCCCCC PYVRGSVVSMEPGGSAIEASKRGREAVHEMIKIAVEKRIDRITLKKSFLIPKVFELVYAP CEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VWIAHYSYKGGHYTAIVDAVRGEVLGGTSPINLTARTRMMILSLALGGIMIGSSVAMLIH HHEEEEECCCCCEEEEHHHHHCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEE TGPYQLAEMFQIILLLLGIAMCMAGYPAFKEGRTFVATGTMTHVASLRPAVRVPKQLTDQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCHHHHCCHHHHHH EILNHDSTILQCPLCGEEVEQPWGEVITPCKKCSHLLDITANTVKTVPYDVAKPDLLAKV HHHCCCCCEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHH AMEGVKADFIPFWRFDVDLEVTDKLTGGDTTTGLPDISGKRSYYICAADIPRYLAEPWEI HHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCEEE DMTIRNPEIVEVVAGYEGNYMPILINNNTARELTEFLYLRYETEKPGILQVLRYNFTVEN EEEECCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHEEEECCCCCHHHHEEECEEECC SRIVYIPYYKEETSYIPGI CEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA