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The map label for this gene is ykgD [C]

Identifier: 124266198

GI number: 124266198

Start: 1068464

End: 1069477

Strand: Reverse

Name: ykgD [C]

Synonym: Mpe_A1005

Alternate gene names: 124266198

Gene position: 1069477-1068464 (Counterclockwise)

Preceding gene: 124266201

Following gene: 124266195

Centisome position: 26.44

GC content: 71.5

Gene sequence:

>1014_bases
ATGACCGAAATGCCGCCCGTCTTGCCCGAAACGCCGCCGGCCCCGCAGGCGTCCGACCTGCTGTCGGACCTGCTCGGCAG
CATGCATCTGGCCGGCATGGTGCTGTTCCGCGCCGCGTTCCGCGAGCCCTGGGCGGTGCTCACGCCGGGGTCGGCACAGC
TGGCGCGGGTGCTGCCGTTCCGCACCGAGCACATCATTCCCTTCCATGTCATCGCGACCGGCAGTTGCCGGCTGGCGCTG
CCTGGGCACGAGCCGGTGTGGCTGCGCGAAGGCGATGCCGTGTTGCTGCCCTACGGCGACAGCCACCGCCTCGAAGGCCT
CGAGGAGACCGCGCCGGTGCAGGTCGGCCAGCTGCTGCCCTGCCAGCCCTGGAAGGACATGCCGCAGGTGGAGCATGGCG
GCGGCGGCGCCGTCACGCACATCATCTGCGGCTTCCTGCAGTGCGACGAGCTGCTGTTCCGCCCCATCCTGCGGCATCTG
CCGACCCTGCTGCACGTGAGCCCCGACGCCACGCCGGCCGACCACTGGCTGGGCAGCACCATCCGCCACACCGCCGCCGA
GGCCAGCCGGACCACGCCGGGCTCGCGCAGCATGCTGCCGCGGCTGACCGAGCTGATGTTCGTGGAGATCCTGCGCAAGC
ACATGCAGGGCCTGTCGGACGACGAGAACGGCTGGTTCGCCGCGTGCAGGGACCCGGTGACCGGCTCGGCGCTGAAGCTG
CTGCACGATGCGCCGCTGCAGGACTGGAGCGTGGAGCGGCTGGCACGCGCAGTCGGCGTCTCGCGCACGGTGCTGGCCGA
GCGCTTCCGTCACTACCTCGACCAGCCGCCGATGCAGTACCTGGCGCACTGGCGGCTGCAGCTCGCCGCCCAGCAGCTGA
AGACCGGCGACCAGCCGCTGAAGACCATTGCCGACCGGGTGGGTTACGAGTCGGAGGCCGCCTTCAGCCGCGCCTTCAAG
CGCCACTTCGGCCTGCCGCCCGGCAGCTGGCGGCTGCGGCAGGGCACGCACTGA

Upstream 100 bases:

>100_bases
CGTGATCACCACCACCAGATCTCTCGATTCCGTTGCCATTGACAGCCTCCTTGCTGCATCCTTGATGACGTCAGCTTAGG
TCGATCGCCCCGAGGAAGCC

Downstream 100 bases:

>100_bases
GCCACGGCCGCGGCCGGCGTCAGCGCGCGCCGGCCTCCTGCTCGATCAGCCGCTGCAGCAGGCGTCGCACCTTCACCGGC
GCGACGTCGTTCGTCATCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTEMPPVLPETPPAPQASDLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPFRTEHIIPFHVIATGSCRLAL
PGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPWKDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHL
PTLLHVSPDATPADHWLGSTIRHTAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKL
LHDAPLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTIADRVGYESEAAFSRAFK
RHFGLPPGSWRLRQGTH

Sequences:

>Translated_337_residues
MTEMPPVLPETPPAPQASDLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPFRTEHIIPFHVIATGSCRLAL
PGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPWKDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHL
PTLLHVSPDATPADHWLGSTIRHTAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKL
LHDAPLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTIADRVGYESEAAFSRAFK
RHFGLPPGSWRLRQGTH
>Mature_336_residues
TEMPPVLPETPPAPQASDLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPFRTEHIIPFHVIATGSCRLALP
GHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPWKDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHLP
TLLHVSPDATPADHWLGSTIRHTAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKLL
HDAPLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTIADRVGYESEAAFSRAFKR
HFGLPPGSWRLRQGTH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=270, Percent_Identity=27.7777777777778, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082197, Length=92, Percent_Identity=35.8695652173913, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37454; Mature: 37322

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMPPVLPETPPAPQASDLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCC
RTEHIIPFHVIATGSCRLALPGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLP
CCCCCCEEEEEECCCEEEECCCCCCEEEECCCEEEEECCCCHHHCCCHHHCCCCCCCCCC
CQPWKDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHLPTLLHVSPDATPADHWLGST
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
IRHTAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
LHDAPLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPL
HHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
KTIADRVGYESEAAFSRAFKRHFGLPPGSWRLRQGTH
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TEMPPVLPETPPAPQASDLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCC
RTEHIIPFHVIATGSCRLALPGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLP
CCCCCCEEEEEECCCEEEECCCCCCEEEECCCEEEEECCCCHHHCCCHHHCCCCCCCCCC
CQPWKDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHLPTLLHVSPDATPADHWLGST
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
IRHTAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
LHDAPLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPL
HHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
KTIADRVGYESEAAFSRAFKRHFGLPPGSWRLRQGTH
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]