Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is ttuD [H]

Identifier: 124266169

GI number: 124266169

Start: 1039052

End: 1040341

Strand: Direct

Name: ttuD [H]

Synonym: Mpe_A0976

Alternate gene names: 124266169

Gene position: 1039052-1040341 (Clockwise)

Preceding gene: 124266168

Following gene: 124266172

Centisome position: 25.69

GC content: 73.72

Gene sequence:

>1290_bases
GTGACCGCCGCCACCGCGATAGATCGCCGGCCGCTGCTGCGCGCGCTGTTCGACGCGGCCGTGGCTGCGGCGCAGCCGGC
GCTGTGCCTGCCGGCCCATCTGCCCGAGAAGCCGACGGGCCGCACCTTCGTGATCGGCGCCGGCAAGGCCTCGGCCGCGA
TGGCGCGGGTGCTGGAGCAGCACTGGGACGGCCCGCTGCAGGGCCTGGTGGTCACCCGCTACGGCTATGCGGTGCCCTGC
GAGCGCATCGAGATCGTCGAGGCCGCCCACCCGGTGCCCGACGCCGCCGGGCTGCGCGCGGCCGAACGCATCCGTGCGCT
GGTGAGCGATCTGCGCGCCGACGACCTGGTGATCGCTCTCATCTCCGGCGGTGGCTCCTCGCTGCTGGTGGCGCCGGGCC
CCGGGCTCACGCTGGCCGACAAGCAGGCCGTCAACACCGCACTGCTGGAGAGCGGCGCGACGATCTCCGAGATGAACTGC
GTGCGTCGGCACCTGTCGTCGCTGAAGGGCGGGCGGCTGGCCGCCGCCTGCCACCCGGCCCGGCTAGTGAGCCTGCTGAT
CTCCGACGTGCCGGGCGACAACCCGATCGACATCGCATCGGGCCCGACCGTGGCCGACCCCACCACCTGTGCCGACGCGC
TGGCCATCGTGCAGCGCTACCGGATCGCGCTGCCGCCGGCGGTGCGCGCGCTGCTGGAAAGCGGCGACGGCGAGACCGTC
AAGCCGCACGATCCCCGCCTGGCACGCAGCGAGACGCGCATCATCACTGCGCCGCAGATCGCGCTCGAGGCGGCGGCGCG
GATCGCTCGCGACGCCGGCCTCACGCCCTACATCCTGGGCGACAGCCTCGAGGGCGAGGCACGCGAGGTCGGCAAGACCA
TCGCCGGCATCGCAAGGCAGGTGGTGCTGCACGGCCAGCCGTTCCGCCCGCCCTGCGTGTTGCTGTCGGGCGGCGAGACC
ACGGTCACCTTGAAAGGCCGCGGCCGCGGTGGCCGCAATGTCGAGTTCCTGCTGTCGCTTGCCATCGCGCTGGACGGCCT
GCCCGGCGTGCATGCGATCGCGGGCGACACCGACGGCGTCGACGGCGTCGAGGAGATCGCCGGCGCCTGCGCCGCGCCCG
ACACGCTGGTGCGTGCCTGGGCGCTCGGCCTGCGCCCGCGCGCCAGCCTCGACGACAACGACGGCCACGGCTTCTTCCAG
GCGCTGGGCGACTCGATCGTCACCGGCCCGACGCTGACCAACGTGAACGACTTCCGGGCTGTGCTGATCGAGGGCCCGGC
CGGCGCCTGA

Upstream 100 bases:

>100_bases
GGCCTGCGCCGCCAACGGCATGGCCGACCTCGACCACTCCGCGCTGGTGCGGGCGCTGGAGCTGATGGCGGGCCACGACG
TGGCCGCGGCCTGAGCGACC

Downstream 100 bases:

>100_bases
ACGCGCTTCAGGTCTTCAGCCGGTAGCCGGTGCGGAAGATCCAGGCCACGACGGCCAGCGAGCCGGCGAGGAAAGCGAAG
GTCATGCCCAGGCTCAGTGC

Product: hydroxypyruvate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTAATAIDRRPLLRALFDAAVAAAQPALCLPAHLPEKPTGRTFVIGAGKASAAMARVLEQHWDGPLQGLVVTRYGYAVPC
ERIEIVEAAHPVPDAAGLRAAERIRALVSDLRADDLVIALISGGGSSLLVAPGPGLTLADKQAVNTALLESGATISEMNC
VRRHLSSLKGGRLAAACHPARLVSLLISDVPGDNPIDIASGPTVADPTTCADALAIVQRYRIALPPAVRALLESGDGETV
KPHDPRLARSETRIITAPQIALEAAARIARDAGLTPYILGDSLEGEAREVGKTIAGIARQVVLHGQPFRPPCVLLSGGET
TVTLKGRGRGGRNVEFLLSLAIALDGLPGVHAIAGDTDGVDGVEEIAGACAAPDTLVRAWALGLRPRASLDDNDGHGFFQ
ALGDSIVTGPTLTNVNDFRAVLIEGPAGA

Sequences:

>Translated_429_residues
MTAATAIDRRPLLRALFDAAVAAAQPALCLPAHLPEKPTGRTFVIGAGKASAAMARVLEQHWDGPLQGLVVTRYGYAVPC
ERIEIVEAAHPVPDAAGLRAAERIRALVSDLRADDLVIALISGGGSSLLVAPGPGLTLADKQAVNTALLESGATISEMNC
VRRHLSSLKGGRLAAACHPARLVSLLISDVPGDNPIDIASGPTVADPTTCADALAIVQRYRIALPPAVRALLESGDGETV
KPHDPRLARSETRIITAPQIALEAAARIARDAGLTPYILGDSLEGEAREVGKTIAGIARQVVLHGQPFRPPCVLLSGGET
TVTLKGRGRGGRNVEFLLSLAIALDGLPGVHAIAGDTDGVDGVEEIAGACAAPDTLVRAWALGLRPRASLDDNDGHGFFQ
ALGDSIVTGPTLTNVNDFRAVLIEGPAGA
>Mature_428_residues
TAATAIDRRPLLRALFDAAVAAAQPALCLPAHLPEKPTGRTFVIGAGKASAAMARVLEQHWDGPLQGLVVTRYGYAVPCE
RIEIVEAAHPVPDAAGLRAAERIRALVSDLRADDLVIALISGGGSSLLVAPGPGLTLADKQAVNTALLESGATISEMNCV
RRHLSSLKGGRLAAACHPARLVSLLISDVPGDNPIDIASGPTVADPTTCADALAIVQRYRIALPPAVRALLESGDGETVK
PHDPRLARSETRIITAPQIALEAAARIARDAGLTPYILGDSLEGEAREVGKTIAGIARQVVLHGQPFRPPCVLLSGGETT
VTLKGRGRGGRNVEFLLSLAIALDGLPGVHAIAGDTDGVDGVEEIAGACAAPDTLVRAWALGLRPRASLDDNDGHGFFQA
LGDSIVTGPTLTNVNDFRAVLIEGPAGA

Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]

COG id: COG2379

COG function: function code G; Putative glycerate kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI31543063, Length=488, Percent_Identity=35.0409836065574, Blast_Score=198, Evalue=7e-51,
Organism=Caenorhabditis elegans, GI193205461, Length=414, Percent_Identity=32.3671497584541, Blast_Score=155, Evalue=5e-38,
Organism=Drosophila melanogaster, GI19920578, Length=441, Percent_Identity=28.1179138321995, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007835 [H]

Pfam domain/function: PF05161 MOFRL [H]

EC number: =1.1.1.81 [H]

Molecular weight: Translated: 44298; Mature: 44167

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAATAIDRRPLLRALFDAAVAAAQPALCLPAHLPEKPTGRTFVIGAGKASAAMARVLEQ
CCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
HWDGPLQGLVVTRYGYAVPCERIEIVEAAHPVPDAAGLRAAERIRALVSDLRADDLVIAL
HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
ISGGGSSLLVAPGPGLTLADKQAVNTALLESGATISEMNCVRRHLSSLKGGRLAAACHPA
EECCCCEEEEECCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCHH
RLVSLLISDVPGDNPIDIASGPTVADPTTCADALAIVQRYRIALPPAVRALLESGDGETV
HHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
KPHDPRLARSETRIITAPQIALEAAARIARDAGLTPYILGDSLEGEAREVGKTIAGIARQ
CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
VVLHGQPFRPPCVLLSGGETTVTLKGRGRGGRNVEFLLSLAIALDGLPGVHAIAGDTDGV
HHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
DGVEEIAGACAAPDTLVRAWALGLRPRASLDDNDGHGFFQALGDSIVTGPTLTNVNDFRA
CHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHCCCCCCCCCCCEEE
VLIEGPAGA
EEEECCCCC
>Mature Secondary Structure 
TAATAIDRRPLLRALFDAAVAAAQPALCLPAHLPEKPTGRTFVIGAGKASAAMARVLEQ
CCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
HWDGPLQGLVVTRYGYAVPCERIEIVEAAHPVPDAAGLRAAERIRALVSDLRADDLVIAL
HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
ISGGGSSLLVAPGPGLTLADKQAVNTALLESGATISEMNCVRRHLSSLKGGRLAAACHPA
EECCCCEEEEECCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCHH
RLVSLLISDVPGDNPIDIASGPTVADPTTCADALAIVQRYRIALPPAVRALLESGDGETV
HHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
KPHDPRLARSETRIITAPQIALEAAARIARDAGLTPYILGDSLEGEAREVGKTIAGIARQ
CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
VVLHGQPFRPPCVLLSGGETTVTLKGRGRGGRNVEFLLSLAIALDGLPGVHAIAGDTDGV
HHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
DGVEEIAGACAAPDTLVRAWALGLRPRASLDDNDGHGFFQALGDSIVTGPTLTNVNDFRA
CHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHCCCCCCCCCCCEEE
VLIEGPAGA
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592429 [H]