Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is ybbP [H]

Identifier: 124266003

GI number: 124266003

Start: 849194

End: 851764

Strand: Direct

Name: ybbP [H]

Synonym: Mpe_A0810

Alternate gene names: 124266003

Gene position: 849194-851764 (Clockwise)

Preceding gene: 124266002

Following gene: 124266007

Centisome position: 21.0

GC content: 74.37

Gene sequence:

>2571_bases
ATGAACGCGCCCGCTCCGACCCCGCCGACCCTGTGGACCCTGGCACGCCGGCAGCTCGTGCGCGACTTCCGCGCCGGTGA
ACTGCGGCTGCTGATCGTCGCGGTGATGCTGGCGGTGGCCGCGCTCACCGCGGTCGGCTTCTTCGCCGACCGGCTGAATC
AGGGCCTGGCGCGCGACGCGCGCTCGCTGCTCGGCGGTGACGCCATCGTCGCGAGCGACCAGCCGGCGCCGTCGGGCCTG
ACCGAGCGGGCCCGTGCCGACGGGCTGGTGGTTGCCAACACCGTGAGCTTCCCCAGCATGGGCCGCGCGCCGGACGCGCA
GGGCGGGGCCTCGCGCCTGGTGGCCGTCAAGGCGGCCAGCGACGGCTATCCGCTGCGCGGCCAGCTGAAGATCGCCGATG
CGCCGGGTGCCCCCGAGCGCCGGGCCACGGGCGTGCCGGCCCCAGGCAGTGTGTGGGTCGACGCGGCCATCCTCGACTCG
CTGAACCTGAAGCCCGGCGATCCGCTGCTGCTCGGCGACGCCAGCCTCACGATCGCGGCCGTCATCACCCTCGAGCCTGA
CCGCGGGGCCGGCTTCATGAGTTTCGCGCCGCGCGCGCTGCTGAACATCGCCGACCTGCCGGCCACCGGACTGGTGCAGC
CGGCCAGCCGCGTGACCTATCGGCTGGCGCTGGCCGGGCAGGGACCGGGCGGCGATGCGGCGGTGCGCGGCTACGTGGCC
TGGGCCGAGACCGAGGCCAAGGCGCAGGGCTGGCGCGGGTTGCGCATCGAGTCGCTCGACAGCGGTCGCCCGGAGATGCG
CCAGACGCTGGACCGCGCCGCCAAGTTCCTGAACCTCGTCGCGCTGCTGGCCGCGCTGCTGGCCGCGGTGGCGGTGGGCA
TCGCCGCGCGCGACTTCGCCGGTCGCCACCTCGACGACTGCGCGATGCTGCGCGTGCTGGGCCAGCCGCAGCGCCGCATC
GCCGGGGCCTATACCGTGGAGTTCGCGGTGGTGGGGCTGATCGCCAGCGCGCTGGGCGTGCTGCTCGGCCTGGTGGTGCA
CTTCGTGTTCGTCGCATTGCTGGCCGGGCTGGTGGATTCGGCGCTGCCGGCGCCCAGCGTGTGGCCGGCGCTGTTCGGCC
TGGGTGTGGGACTCACGCTGCTGCTCGGCTTCGGGCTGCCGCCGGTGCTGCAGCTCGCGCAGGTGCCGCCGCTGCGGGTG
ATCCGGCGCGACCTCGGCGAGCTGCGGCCGGCGTCGGTCGGCGTGCTGCTGGCCGGCTTTGCGGGCTTCTCGGCGCTGCT
GCTGGCGGTGGCCTCGGACCTGAAGCTCGGGCTCATCACGGTGGGCGGCTTCGCGGTCGCGATCGCGGTGTTCGCGCTGA
TGTCGTGGCTGGCGGTGCAGGCGCTGCGGCGCGCGGTGCCGTCGTCGGCCGCCGGTGCGCCGCGCTGGCTGGTGCTGGCG
ACACGCCAGGTCGCGGCGCGGCCCGGTTTCGCGGTGCTGCAGGTCAGCGCGCTCAGCGTCGGTCTGCTGGCGCTGGTGCT
GCTGGTGCTGCTGCGCACCGACCTGATCAGCAGCTGGCGCCAGGCCACGCCGCCCGACGCGCCGAACCGCTTCGTCATCA
ATGTGCAGCCCGAGCAGGGCGAGGCCTTCCAGCAGCAGCTGCGCGACGGCGGCGTGAAGACCTACGACTGGTACCCGATG
ATCCGCGGCCGCCTCGTCGCGGTGAACGGCAAGCCGGTCAAGCCCGAGGACTACGCCGAGGACCGCGCGCAGCGCCTCGT
CGAGCGCGAGTTCAATCTCAGCCACGACGCGCGGCTGCCGGGCCACAACCAGGTCGTCGCGGGGCGCTGGACGGCCGACG
AGGCCGGCGCGATCAGCGTCGAGGAAGGGCTGGCGGCGACGCTGGGCGTGAAGCTCGGCGACACGCTGCGCTTCGACATC
GCCGGCGTGCAGCAGGAAGGGCGCATCACCAGCCTGCGCAAGGTCGACTGGGGCTCGATGCGGGTCAACTTCTTCGTGCT
GTTCCCGACCGCCGACCTGCCCGAGGAGCTGCCGGCCACCTACATCGCGGCGTTCCGCGCACCCCCGGCCCAGCCGGGCG
CGCCGGGCTTCGACAACGCGCTGTCGCGGGCCTTCCCGAACATCACCAACGTGGACGTGTCGGCCTCGATCGCCCAGGTG
CAGCGCGTGCTCGACCAGGTGATCCGCGCGGTGGAGTTCCTGTTCGGCTTCACGCTGGCGACCGGCCTGGTGGTGCTGTT
CGCGGCGGTCACGGCCACGCGCGAGCAGCGCGCCCGCGAGTTCGCGGTGATGCGCGCGCTCGGCGCCGGCGGCGCGCTGC
TGGCGCGCGTGCAGCGCGCCGAGCTGTTGGGGGTGGGCGCACTGGCCGGCGTGCTGGCTTCGGTGGCCGCGCTGGCGGTC
GGCTGGGCGCTGGCGCGCTATGCCTTCGAGTTCACCTGGAGCGCACCGCTGTGGGTGCCGCTGGCCGGCGGCGCGGCCGG
TGCGCTGCTGGCACTGGCGGCCGGCTGGTGGGGCCTGCGCGAGGTGCTGACACGGCCGGTGGTCGAGACGCTGCGTCGCG
CGGCGCAGTAG

Upstream 100 bases:

>100_bases
TTTGCCCCATGCCCTCCCAAAGCCCCGCGCGGCACTTGCAGTGGTCGCTGCGCTACCGTGCAGCCTTTGCTGACATGCTC
CCGCCGCACCTGTCTCACCG

Downstream 100 bases:

>100_bases
CGGGGAGTGCGTGGGGCTTCGCCTGACGAATGCGGCCATCCCGTCTTGGCGTGCGCTGTTGAGGAACGGCCATCTGGCGT
TGACTAATCCGGGGCGCTCG

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 856; Mature: 856

Protein sequence:

>856_residues
MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL
TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS
LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA
WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI
AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV
IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA
TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM
IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI
AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV
QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV
GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ

Sequences:

>Translated_856_residues
MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL
TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS
LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA
WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI
AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV
IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA
TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM
IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI
AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV
QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV
GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ
>Mature_856_residues
MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL
TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS
LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA
WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI
AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV
IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA
TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM
IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI
AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV
QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV
GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ

Specific function: Unknown

COG id: COG3127

COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1786704, Length=834, Percent_Identity=34.052757793765, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 89936; Mature: 89936

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00421 TM4_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLGGDAIVASDQPAPSGLTERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAAS
HHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
DGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDSLNLKPGDPLLLGDASLTIAA
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCEEEECCCEEEEE
VITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCCHHHEEEEE
WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFA
EEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRHLDDCAMLRVLGQPQRRIAGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDS
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRVIRRDLGELRPASVGVLLAGF
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH
AGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQG
HHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
EAFQQQLRDGGVKTYDWYPMIRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLP
HHHHHHHHHCCCEEEEECHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDIAGVQQEGRITSLRKVDWGSM
CCCCEEEEECCCCCCCCEEHHHCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCE
RVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV
EEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ELLGVGALAGVLASVAALAVGWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHH
EVLTRPVVETLRRAAQ
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLGGDAIVASDQPAPSGLTERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAAS
HHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
DGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDSLNLKPGDPLLLGDASLTIAA
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCEEEECCCEEEEE
VITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCCHHHEEEEE
WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFA
EEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRHLDDCAMLRVLGQPQRRIAGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDS
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRVIRRDLGELRPASVGVLLAGF
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH
AGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQG
HHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
EAFQQQLRDGGVKTYDWYPMIRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLP
HHHHHHHHHCCCEEEEECHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDIAGVQQEGRITSLRKVDWGSM
CCCCEEEEECCCCCCCCEEHHHCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCE
RVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV
EEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ELLGVGALAGVLASVAALAVGWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHH
EVLTRPVVETLRRAAQ
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]