| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is ybbP [H]
Identifier: 124266003
GI number: 124266003
Start: 849194
End: 851764
Strand: Direct
Name: ybbP [H]
Synonym: Mpe_A0810
Alternate gene names: 124266003
Gene position: 849194-851764 (Clockwise)
Preceding gene: 124266002
Following gene: 124266007
Centisome position: 21.0
GC content: 74.37
Gene sequence:
>2571_bases ATGAACGCGCCCGCTCCGACCCCGCCGACCCTGTGGACCCTGGCACGCCGGCAGCTCGTGCGCGACTTCCGCGCCGGTGA ACTGCGGCTGCTGATCGTCGCGGTGATGCTGGCGGTGGCCGCGCTCACCGCGGTCGGCTTCTTCGCCGACCGGCTGAATC AGGGCCTGGCGCGCGACGCGCGCTCGCTGCTCGGCGGTGACGCCATCGTCGCGAGCGACCAGCCGGCGCCGTCGGGCCTG ACCGAGCGGGCCCGTGCCGACGGGCTGGTGGTTGCCAACACCGTGAGCTTCCCCAGCATGGGCCGCGCGCCGGACGCGCA GGGCGGGGCCTCGCGCCTGGTGGCCGTCAAGGCGGCCAGCGACGGCTATCCGCTGCGCGGCCAGCTGAAGATCGCCGATG CGCCGGGTGCCCCCGAGCGCCGGGCCACGGGCGTGCCGGCCCCAGGCAGTGTGTGGGTCGACGCGGCCATCCTCGACTCG CTGAACCTGAAGCCCGGCGATCCGCTGCTGCTCGGCGACGCCAGCCTCACGATCGCGGCCGTCATCACCCTCGAGCCTGA CCGCGGGGCCGGCTTCATGAGTTTCGCGCCGCGCGCGCTGCTGAACATCGCCGACCTGCCGGCCACCGGACTGGTGCAGC CGGCCAGCCGCGTGACCTATCGGCTGGCGCTGGCCGGGCAGGGACCGGGCGGCGATGCGGCGGTGCGCGGCTACGTGGCC TGGGCCGAGACCGAGGCCAAGGCGCAGGGCTGGCGCGGGTTGCGCATCGAGTCGCTCGACAGCGGTCGCCCGGAGATGCG CCAGACGCTGGACCGCGCCGCCAAGTTCCTGAACCTCGTCGCGCTGCTGGCCGCGCTGCTGGCCGCGGTGGCGGTGGGCA TCGCCGCGCGCGACTTCGCCGGTCGCCACCTCGACGACTGCGCGATGCTGCGCGTGCTGGGCCAGCCGCAGCGCCGCATC GCCGGGGCCTATACCGTGGAGTTCGCGGTGGTGGGGCTGATCGCCAGCGCGCTGGGCGTGCTGCTCGGCCTGGTGGTGCA CTTCGTGTTCGTCGCATTGCTGGCCGGGCTGGTGGATTCGGCGCTGCCGGCGCCCAGCGTGTGGCCGGCGCTGTTCGGCC TGGGTGTGGGACTCACGCTGCTGCTCGGCTTCGGGCTGCCGCCGGTGCTGCAGCTCGCGCAGGTGCCGCCGCTGCGGGTG ATCCGGCGCGACCTCGGCGAGCTGCGGCCGGCGTCGGTCGGCGTGCTGCTGGCCGGCTTTGCGGGCTTCTCGGCGCTGCT GCTGGCGGTGGCCTCGGACCTGAAGCTCGGGCTCATCACGGTGGGCGGCTTCGCGGTCGCGATCGCGGTGTTCGCGCTGA TGTCGTGGCTGGCGGTGCAGGCGCTGCGGCGCGCGGTGCCGTCGTCGGCCGCCGGTGCGCCGCGCTGGCTGGTGCTGGCG ACACGCCAGGTCGCGGCGCGGCCCGGTTTCGCGGTGCTGCAGGTCAGCGCGCTCAGCGTCGGTCTGCTGGCGCTGGTGCT GCTGGTGCTGCTGCGCACCGACCTGATCAGCAGCTGGCGCCAGGCCACGCCGCCCGACGCGCCGAACCGCTTCGTCATCA ATGTGCAGCCCGAGCAGGGCGAGGCCTTCCAGCAGCAGCTGCGCGACGGCGGCGTGAAGACCTACGACTGGTACCCGATG ATCCGCGGCCGCCTCGTCGCGGTGAACGGCAAGCCGGTCAAGCCCGAGGACTACGCCGAGGACCGCGCGCAGCGCCTCGT CGAGCGCGAGTTCAATCTCAGCCACGACGCGCGGCTGCCGGGCCACAACCAGGTCGTCGCGGGGCGCTGGACGGCCGACG AGGCCGGCGCGATCAGCGTCGAGGAAGGGCTGGCGGCGACGCTGGGCGTGAAGCTCGGCGACACGCTGCGCTTCGACATC GCCGGCGTGCAGCAGGAAGGGCGCATCACCAGCCTGCGCAAGGTCGACTGGGGCTCGATGCGGGTCAACTTCTTCGTGCT GTTCCCGACCGCCGACCTGCCCGAGGAGCTGCCGGCCACCTACATCGCGGCGTTCCGCGCACCCCCGGCCCAGCCGGGCG CGCCGGGCTTCGACAACGCGCTGTCGCGGGCCTTCCCGAACATCACCAACGTGGACGTGTCGGCCTCGATCGCCCAGGTG CAGCGCGTGCTCGACCAGGTGATCCGCGCGGTGGAGTTCCTGTTCGGCTTCACGCTGGCGACCGGCCTGGTGGTGCTGTT CGCGGCGGTCACGGCCACGCGCGAGCAGCGCGCCCGCGAGTTCGCGGTGATGCGCGCGCTCGGCGCCGGCGGCGCGCTGC TGGCGCGCGTGCAGCGCGCCGAGCTGTTGGGGGTGGGCGCACTGGCCGGCGTGCTGGCTTCGGTGGCCGCGCTGGCGGTC GGCTGGGCGCTGGCGCGCTATGCCTTCGAGTTCACCTGGAGCGCACCGCTGTGGGTGCCGCTGGCCGGCGGCGCGGCCGG TGCGCTGCTGGCACTGGCGGCCGGCTGGTGGGGCCTGCGCGAGGTGCTGACACGGCCGGTGGTCGAGACGCTGCGTCGCG CGGCGCAGTAG
Upstream 100 bases:
>100_bases TTTGCCCCATGCCCTCCCAAAGCCCCGCGCGGCACTTGCAGTGGTCGCTGCGCTACCGTGCAGCCTTTGCTGACATGCTC CCGCCGCACCTGTCTCACCG
Downstream 100 bases:
>100_bases CGGGGAGTGCGTGGGGCTTCGCCTGACGAATGCGGCCATCCCGTCTTGGCGTGCGCTGTTGAGGAACGGCCATCTGGCGT TGACTAATCCGGGGCGCTCG
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ
Sequences:
>Translated_856_residues MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ >Mature_856_residues MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDARSLLGGDAIVASDQPAPSGL TERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAASDGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDS LNLKPGDPLLLGDASLTIAAVITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFAGRHLDDCAMLRVLGQPQRRI AGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDSALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRV IRRDLGELRPASVGVLLAGFAGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQGEAFQQQLRDGGVKTYDWYPM IRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLPGHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDI AGVQQEGRITSLRKVDWGSMRVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRAELLGVGALAGVLASVAALAV GWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLREVLTRPVVETLRRAAQ
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=834, Percent_Identity=34.052757793765, Blast_Score=358, Evalue=1e-100,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89936; Mature: 89936
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: PS00421 TM4_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDA CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSLLGGDAIVASDQPAPSGLTERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAAS HHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC DGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDSLNLKPGDPLLLGDASLTIAA CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCEEEECCCEEEEE VITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCCHHHEEEEE WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFA EEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRHLDDCAMLRVLGQPQRRIAGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDS CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRVIRRDLGELRPASVGVLLAGF CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH AGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQG HHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC EAFQQQLRDGGVKTYDWYPMIRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLP HHHHHHHHHCCCEEEEECHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC GHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDIAGVQQEGRITSLRKVDWGSM CCCCEEEEECCCCCCCCEEHHHCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCE RVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV EEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ELLGVGALAGVLASVAALAVGWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHH EVLTRPVVETLRRAAQ HHHHHHHHHHHHHHCC >Mature Secondary Structure MNAPAPTPPTLWTLARRQLVRDFRAGELRLLIVAVMLAVAALTAVGFFADRLNQGLARDA CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSLLGGDAIVASDQPAPSGLTERARADGLVVANTVSFPSMGRAPDAQGGASRLVAVKAAS HHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC DGYPLRGQLKIADAPGAPERRATGVPAPGSVWVDAAILDSLNLKPGDPLLLGDASLTIAA CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCEEEECCCEEEEE VITLEPDRGAGFMSFAPRALLNIADLPATGLVQPASRVTYRLALAGQGPGGDAAVRGYVA EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCCHHHEEEEE WAETEAKAQGWRGLRIESLDSGRPEMRQTLDRAAKFLNLVALLAALLAAVAVGIAARDFA EEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRHLDDCAMLRVLGQPQRRIAGAYTVEFAVVGLIASALGVLLGLVVHFVFVALLAGLVDS CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALPAPSVWPALFGLGVGLTLLLGFGLPPVLQLAQVPPLRVIRRDLGELRPASVGVLLAGF CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH AGFSALLLAVASDLKLGLITVGGFAVAIAVFALMSWLAVQALRRAVPSSAAGAPRWLVLA HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE TRQVAARPGFAVLQVSALSVGLLALVLLVLLRTDLISSWRQATPPDAPNRFVINVQPEQG HHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC EAFQQQLRDGGVKTYDWYPMIRGRLVAVNGKPVKPEDYAEDRAQRLVEREFNLSHDARLP HHHHHHHHHCCCEEEEECHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC GHNQVVAGRWTADEAGAISVEEGLAATLGVKLGDTLRFDIAGVQQEGRITSLRKVDWGSM CCCCEEEEECCCCCCCCEEHHHCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCE RVNFFVLFPTADLPEELPATYIAAFRAPPAQPGAPGFDNALSRAFPNITNVDVSASIAQV EEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH QRVLDQVIRAVEFLFGFTLATGLVVLFAAVTATREQRAREFAVMRALGAGGALLARVQRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ELLGVGALAGVLASVAALAVGWALARYAFEFTWSAPLWVPLAGGAAGALLALAAGWWGLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHH EVLTRPVVETLRRAAQ HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]