| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is 124265999
Identifier: 124265999
GI number: 124265999
Start: 844645
End: 845802
Strand: Direct
Name: 124265999
Synonym: Mpe_A0806
Alternate gene names: NA
Gene position: 844645-845802 (Clockwise)
Preceding gene: 124265998
Following gene: 124266000
Centisome position: 20.89
GC content: 65.54
Gene sequence:
>1158_bases ATGAACCTACCGAGCCAGCGCCGCGCGCTGCTGAAACTGGCGGCACTGTCGTCCCTCGCGGCGAGCGCGGCGCTGATGGG TTGCGGCAAGAAGGAGGAGCCGGCCCCGGCACCTGCCCCGGCTGCAGCGCCCGCCGCCGCTCCGGCCGCCGAGCCGCTGA AGGCCGCGTGGGTCTATGTCGGCCCGGTCGGTGACGCAGGCTGGACCTACGCCCATGACCAGGGCCGCAAGGCGGTCGAG GCGGAATACGGCGACAAGGTCAAGACGACCTTCGTCGAGAAGGTGCCGGAGGGCGCCGACGCAGAGCGCGTGATCCGCGA CCTGGCGGTGCAGGGCAACAAGATCATCTTCGCCACCTCGTTCGGCTACATGGAGCCGATGCTGAAGGTGGCAGGCGAGT TCCCGGACGTGAAGTTCGAGCATGCCACCGGCTACAAGACGGCGCCCAACATGCGCATCTACGATGCCAAGTTCTATGAA GACGCCTATGTGGCCGGCATCATCGCCGGCACGATGAGCAAGAGCGGCACGATCGGCTTCGTGGGCTCCTTCCCGATCCC CGAAGTGCTGCGCAACATCAACGCCTACACGCTGGGCGCGCAGAGCGTGAACCCGACGATCAAGACCAAGGTGGTGTGGG TCAGCACCTGGTTCGACCCGCCGAAGGAAGGCGAGGCCGCGCAGTCGCTGATCAACGGCGGCGCCGACGTGCTGTTGCAG AACACCGACTCCTCGGCCGTGCTGCAGACGGCCGAGAAGAACGGCAAGTACGCCTTCGGCTGGGACAGCGACATGAGCGC CTTCGCGCCCAAGGCCCACCTGGCGAGCTGCATCGTCGACTGGGGCGGCTACTACAAGAAGGCCGTCAAGGACGTGATCG ACGGCAGCTGGAAGACCGAGCGCACCGTTTGGGGCGTCAAGGAAGGTCAGAACGACCTGATCAAGATTGCCGACGTGGTG CCCGAGGACACCAAGAAGAAGGTCGACGAGGCGAAGGCCGGCATGAAGGCTGGGACCTTCGAGGTCTTCACCGGCCCGAT CCTTGCCAACGACGGCAAGGAGGTGCTGGCCAAGGGCGTCGCCGCTGACCAGGCATGGAAGGACAAGATCGACTTCTACG TCAAGGGCGTCGAGGGCAAGATACCGTCGGCCAAGTAG
Upstream 100 bases:
>100_bases AACATGCCCGCGTCGCTCGGCAAGCCTTTCCATCCCGGTTCGTGACGGGCAGGACGGCCGGTCCCTTTCTTTCTTCATCC TTCGCCTCACAGGAGTCAAC
Downstream 100 bases:
>100_bases GCGGCGCGGCCCGCGGTCCCACACCCGCGCCGCAGGTGGCGTCCTGCGCCTGGAGTCTGGAGCGAGGGAGCGCGATGAAC GACGAGCATCGCTGGTGGTA
Product: putative lipoprotein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; Membrane Lipoprotein; Basic Membrane Protein Family Protein; ABC Transporter Periplasmic/Surface Lipoprotein; Outer Membrane Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Twin-Arginine Translocation Pathway Signal; Outer Membrane Basic Protein; Tat Pathway Signal Sequence/Basic Membrane Protein; Surface Lipoprotein; Basic Membrane Protein A-Like Protein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; ABC-Type Transport Periplasmic Component
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MNLPSQRRALLKLAALSSLAASAALMGCGKKEEPAPAPAPAAAPAAAPAAEPLKAAWVYVGPVGDAGWTYAHDQGRKAVE AEYGDKVKTTFVEKVPEGADAERVIRDLAVQGNKIIFATSFGYMEPMLKVAGEFPDVKFEHATGYKTAPNMRIYDAKFYE DAYVAGIIAGTMSKSGTIGFVGSFPIPEVLRNINAYTLGAQSVNPTIKTKVVWVSTWFDPPKEGEAAQSLINGGADVLLQ NTDSSAVLQTAEKNGKYAFGWDSDMSAFAPKAHLASCIVDWGGYYKKAVKDVIDGSWKTERTVWGVKEGQNDLIKIADVV PEDTKKKVDEAKAGMKAGTFEVFTGPILANDGKEVLAKGVAADQAWKDKIDFYVKGVEGKIPSAK
Sequences:
>Translated_385_residues MNLPSQRRALLKLAALSSLAASAALMGCGKKEEPAPAPAPAAAPAAAPAAEPLKAAWVYVGPVGDAGWTYAHDQGRKAVE AEYGDKVKTTFVEKVPEGADAERVIRDLAVQGNKIIFATSFGYMEPMLKVAGEFPDVKFEHATGYKTAPNMRIYDAKFYE DAYVAGIIAGTMSKSGTIGFVGSFPIPEVLRNINAYTLGAQSVNPTIKTKVVWVSTWFDPPKEGEAAQSLINGGADVLLQ NTDSSAVLQTAEKNGKYAFGWDSDMSAFAPKAHLASCIVDWGGYYKKAVKDVIDGSWKTERTVWGVKEGQNDLIKIADVV PEDTKKKVDEAKAGMKAGTFEVFTGPILANDGKEVLAKGVAADQAWKDKIDFYVKGVEGKIPSAK >Mature_385_residues MNLPSQRRALLKLAALSSLAASAALMGCGKKEEPAPAPAPAAAPAAAPAAEPLKAAWVYVGPVGDAGWTYAHDQGRKAVE AEYGDKVKTTFVEKVPEGADAERVIRDLAVQGNKIIFATSFGYMEPMLKVAGEFPDVKFEHATGYKTAPNMRIYDAKFYE DAYVAGIIAGTMSKSGTIGFVGSFPIPEVLRNINAYTLGAQSVNPTIKTKVVWVSTWFDPPKEGEAAQSLINGGADVLLQ NTDSSAVLQTAEKNGKYAFGWDSDMSAFAPKAHLASCIVDWGGYYKKAVKDVIDGSWKTERTVWGVKEGQNDLIKIADVV PEDTKKKVDEAKAGMKAGTFEVFTGPILANDGKEVLAKGVAADQAWKDKIDFYVKGVEGKIPSAK
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41119; Mature: 41119
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPSQRRALLKLAALSSLAASAALMGCGKKEEPAPAPAPAAAPAAAPAAEPLKAAWVYV CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE GPVGDAGWTYAHDQGRKAVEAEYGDKVKTTFVEKVPEGADAERVIRDLAVQGNKIIFATS ECCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEC FGYMEPMLKVAGEFPDVKFEHATGYKTAPNMRIYDAKFYEDAYVAGIIAGTMSKSGTIGF CHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECHHHCCHHHHHHHHHCCCCCCCEEE VGSFPIPEVLRNINAYTLGAQSVNPTIKTKVVWVSTWFDPPKEGEAAQSLINGGADVLLQ EECCCHHHHHHCCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE NTDSSAVLQTAEKNGKYAFGWDSDMSAFAPKAHLASCIVDWGGYYKKAVKDVIDGSWKTE CCCCHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RTVWGVKEGQNDLIKIADVVPEDTKKKVDEAKAGMKAGTFEVFTGPILANDGKEVLAKGV CEEECCCCCCCCEEEHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHH AADQAWKDKIDFYVKGVEGKIPSAK HHHHHHHHCCEEEEECCCCCCCCCC >Mature Secondary Structure MNLPSQRRALLKLAALSSLAASAALMGCGKKEEPAPAPAPAAAPAAAPAAEPLKAAWVYV CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE GPVGDAGWTYAHDQGRKAVEAEYGDKVKTTFVEKVPEGADAERVIRDLAVQGNKIIFATS ECCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEC FGYMEPMLKVAGEFPDVKFEHATGYKTAPNMRIYDAKFYEDAYVAGIIAGTMSKSGTIGF CHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECHHHCCHHHHHHHHHCCCCCCCEEE VGSFPIPEVLRNINAYTLGAQSVNPTIKTKVVWVSTWFDPPKEGEAAQSLINGGADVLLQ EECCCHHHHHHCCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE NTDSSAVLQTAEKNGKYAFGWDSDMSAFAPKAHLASCIVDWGGYYKKAVKDVIDGSWKTE CCCCHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RTVWGVKEGQNDLIKIADVVPEDTKKKVDEAKAGMKAGTFEVFTGPILANDGKEVLAKGV CEEECCCCCCCCEEEHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHH AADQAWKDKIDFYVKGVEGKIPSAK HHHHHHHHCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA