| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is yufQ [H]
Identifier: 124265998
GI number: 124265998
Start: 843669
End: 844589
Strand: Direct
Name: yufQ [H]
Synonym: Mpe_A0805
Alternate gene names: 124265998
Gene position: 843669-844589 (Clockwise)
Preceding gene: 124265997
Following gene: 124265999
Centisome position: 20.86
GC content: 71.34
Gene sequence:
>921_bases ATGAACGAAGCCGCGCTGCTGATCGCCGCGACGCTGGCCTCGGGCACGCCGCTGGCCATCGCCGGGTTGGGCCTGTTGCT GAACGAGAAGGCCGGCGTGCTGAACCTCGGCGCCGAGGGGATGATGCTGGTCGCCGCGATCGCCGGCTTCGCCGCCGCGC TGTACACCGGCAGCGACACGCTGGCCTTCGCCGCCGGCGCGCTGGCCGGCATGGCGATGGCGGCGCTGTTCGCGCTGCTC GTGATCGGCCTCAACACCAACCAGTACGCCACGGGCCTGGCGCTGAGCCTGTTCGGTGCGGGCTTCTCGGCCTTCGTCGG CGTCGATCTGGTGGGCAAGAAGCTGGCCGATCGCGCGCCGTTCGAGGTTCCGCTGCTGGCCGACATCCCCTTCTTCGGGC CGGCGCTGTTCCGCCAGCACCCGATGGTCTACCTGGCGATCGCGGCGGTCGCGGCGCTGGCCTGGTTCCTGTACCGCAGC CGCGCCGGCCTGGTGCTGCGCGCGGTGGGCGAGTCGCCCGAGTCCGCCCATGCGCTGGGCTACCCGGTGCGCACGATCCG CTTCGCCGCGGTGGTGGCCGGCGGCGCGTTGTGCGGCGTGGCCGGCGCCTTCCTGTCGGTGGTGTACGCGCCGTTGTGGG TCGAGGGCCTGGTAGCCGGGCGCGGCTGGATCGCGCTGGCGCTCACCACCTTCGCCACCTGGCGACCGGCACGTGTCTTG CTCGGTGCCTACCTGTTCGGCGGCGTGACGATGCTGCAGTTCGCGCTGCAGGGCGCGGGCGTGGAGGTGTCGAGCCAGCT GCTGTCGATGCTGCCCTACATCGCCACGATCGTCGTGCTCGCCCTCATCTCGCGCAACCCGCTGTGGATCCGCATCAACA TGCCCGCGTCGCTCGGCAAGCCTTTCCATCCCGGTTCGTGA
Upstream 100 bases:
>100_bases CTCCCCCCGTTGCGGCTGCGCCGCTCCCCCCCGGGGGGGAGCCGCTGGCGGGCCGGCGAAGCCGGACCCGCGGCGGCCAC TCGGTCGAGGAATCGGCGCC
Downstream 100 bases:
>100_bases CGGGCAGGACGGCCGGTCCCTTTCTTTCTTCATCCTTCGCCTCACAGGAGTCAACATGAACCTACCGAGCCAGCGCCGCG CGCTGCTGAAACTGGCGGCA
Product: putative transmembrane ABC transporter protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MNEAALLIAATLASGTPLAIAGLGLLLNEKAGVLNLGAEGMMLVAAIAGFAAALYTGSDTLAFAAGALAGMAMAALFALL VIGLNTNQYATGLALSLFGAGFSAFVGVDLVGKKLADRAPFEVPLLADIPFFGPALFRQHPMVYLAIAAVAALAWFLYRS RAGLVLRAVGESPESAHALGYPVRTIRFAAVVAGGALCGVAGAFLSVVYAPLWVEGLVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFALQGAGVEVSSQLLSMLPYIATIVVLALISRNPLWIRINMPASLGKPFHPGS
Sequences:
>Translated_306_residues MNEAALLIAATLASGTPLAIAGLGLLLNEKAGVLNLGAEGMMLVAAIAGFAAALYTGSDTLAFAAGALAGMAMAALFALL VIGLNTNQYATGLALSLFGAGFSAFVGVDLVGKKLADRAPFEVPLLADIPFFGPALFRQHPMVYLAIAAVAALAWFLYRS RAGLVLRAVGESPESAHALGYPVRTIRFAAVVAGGALCGVAGAFLSVVYAPLWVEGLVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFALQGAGVEVSSQLLSMLPYIATIVVLALISRNPLWIRINMPASLGKPFHPGS >Mature_306_residues MNEAALLIAATLASGTPLAIAGLGLLLNEKAGVLNLGAEGMMLVAAIAGFAAALYTGSDTLAFAAGALAGMAMAALFALL VIGLNTNQYATGLALSLFGAGFSAFVGVDLVGKKLADRAPFEVPLLADIPFFGPALFRQHPMVYLAIAAVAALAWFLYRS RAGLVLRAVGESPESAHALGYPVRTIRFAAVVAGGALCGVAGAFLSVVYAPLWVEGLVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFALQGAGVEVSSQLLSMLPYIATIVVLALISRNPLWIRINMPASLGKPFHPGS
Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG1079
COG function: function code R; Uncharacterized ABC-type transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 31473; Mature: 31473
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEAALLIAATLASGTPLAIAGLGLLLNEKAGVLNLGAEGMMLVAAIAGFAAALYTGSDT CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCH LAFAAGALAGMAMAALFALLVIGLNTNQYATGLALSLFGAGFSAFVGVDLVGKKLADRAP HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC FEVPLLADIPFFGPALFRQHPMVYLAIAAVAALAWFLYRSRAGLVLRAVGESPESAHALG CCCCEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCC YPVRTIRFAAVVAGGALCGVAGAFLSVVYAPLWVEGLVAGRGWIALALTTFATWRPARVL CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH LGAYLFGGVTMLQFALQGAGVEVSSQLLSMLPYIATIVVLALISRNPLWIRINMPASLGK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCC PFHPGS CCCCCC >Mature Secondary Structure MNEAALLIAATLASGTPLAIAGLGLLLNEKAGVLNLGAEGMMLVAAIAGFAAALYTGSDT CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCH LAFAAGALAGMAMAALFALLVIGLNTNQYATGLALSLFGAGFSAFVGVDLVGKKLADRAP HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC FEVPLLADIPFFGPALFRQHPMVYLAIAAVAALAWFLYRSRAGLVLRAVGESPESAHALG CCCCEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCC YPVRTIRFAAVVAGGALCGVAGAFLSVVYAPLWVEGLVAGRGWIALALTTFATWRPARVL CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH LGAYLFGGVTMLQFALQGAGVEVSSQLLSMLPYIATIVVLALISRNPLWIRINMPASLGK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCC PFHPGS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]