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The map label for this gene is yibD [H]

Identifier: 124265804

GI number: 124265804

Start: 643959

End: 645431

Strand: Reverse

Name: yibD [H]

Synonym: Mpe_A0611

Alternate gene names: 124265804

Gene position: 645431-643959 (Counterclockwise)

Preceding gene: 124265805

Following gene: 124265793

Centisome position: 15.96

GC content: 74.75

Gene sequence:

>1473_bases
ATGGATCGGCATCCGCCGCCGGAGCGCCGCGACGTGAGGCTGCCGCTGCAGGGACTGCAGCGGCTCGAGCACCGCCTGCT
CGAACGCCGCGCCGCCCGTCAGCCCTCGCCGCTGCAGCAGCTGGCGATCCTGCTGCGTGACGCCCATGCGCCGCCCGAGC
GTCCGCTCGCGCTGTGCATCGACCTCGGCCTGGTCCATCGTGCGCGGCAGCTGATGGAGCGTACGCGTGCTCCGCTGGCC
TTGCCCGCGGCGATCCAGCTCGCCTGGCTGGAGGGCGACTTCGACGCGCTCGACCGCTGCGCCGCCGATCCGGCCACTGC
CGCGGCGCTCGCTCGCGCGTCGCAGGGCGTGCAGAACCGCTGTCTGTCGATCCTGGCCTCGCGCGCGCCGCAGGCCGCGC
TCGCGGTGGTGCGGGCGATGCCGCGGCGCCCGGCCTGCGCGCCGGCCGTCGCGCTGCGGGCCGGCGATCCGGACACCGCC
GCCACCTGGCTGCGTGCATGGCCGTGGCGGCTGCATGCCGACTACCTGCTGCTGGCGGCCAACCAGGCCGGCGACGGACC
GCAAGGCCTGGCCTTCCTCAACCGCTATCTGGCGCGCCACGGCCTCGCCGCGCTGCGGCTGCGCCGGTCCGACGCGCCAC
TGGGCGTGACCCAGCTCACGCCGTGCGGGCCGAACGCCGCGCCGGCGTCGACGGCCGTCGGCGAGGCCCGGCTGTCGGTG
GTGATCCCCACCTTCGACAACGCACTGCACATCCGGGCCTCCGTCGAGTCGATGCTGCAGCAGACGCGCAGGCCCGACGA
AGTGCTGGTGATCGACGACGCCAGCCGCGACGACACCGCCGCGATCGTCGCGGCCCTGGCGCAGGTGTACCCGGGCGTCG
TGCGCCTGCTCCGGCTGCCGCACAACCGCGGCGCCTACTTCGCGCGCAACCTCGGCCTGGCAGCCGCGCGCGGCCGCTTC
GTCGCCTTTCACGACGCCGACGACTACGCGCACCCGCAACGCCTCGAACTCGCCCTGGCCCCGCTGCTGGCCGACGAGCA
GCTCCACGCGACGACCAGCCGCTGCGTCCGGCTGGCCGACGACGGACAGTTCGGCGAGGCCCGCACCTGGCCCCTGACGC
GCTGGACGCCGATCTCGCTACTCATGCGGCGCGAGGTCGTGCTGCACCGGGTCGGCTACTTCGACGACCTGCGCTTCGGC
GCCGACAGCGAATACGTCGCGCGGCTCAGGCTGCTGCTGGGCGAACGGCACCACCGCCTCGTCGCGCAACCGCTGTCGCT
GTTCGGCCAGCGTGCGGGCTCCCTGACGACCTCGGGCGAGGCCGGCTTCGACCGGCAGGGCTGGTCGGGCCCGCGGATCG
CCTACCAGGAGGCCTGGACCGAGCGCCATCTCGCTCACCTCCTGCGGGGCGACGCGCTGTTCACGCCGCTGCCCGCGGAA
GTGGCCGCGACCCTGGCAGGCCTCGACGACTGA

Upstream 100 bases:

>100_bases
CGGTGGCGCTGGCCGGCCTGGTGCATGCGGCTCTGATCGACTACCCGCGCTACCTCGACCCCGACACCGGTCGGCGCTGC
GAGGCCGAGCGGCTGATCGA

Downstream 100 bases:

>100_bases
GGGGCGGCCGGACCGCGTCAGGCAGGCGGCGCAGCCCCGGACGACAGCCGGGCCGCATCGTAGTGCGTCGCCACGATGTC
CCGCGTCAGTGCCAAGTCTT

Product: cell wall biogenesis glycosyltransferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MDRHPPPERRDVRLPLQGLQRLEHRLLERRAARQPSPLQQLAILLRDAHAPPERPLALCIDLGLVHRARQLMERTRAPLA
LPAAIQLAWLEGDFDALDRCAADPATAAALARASQGVQNRCLSILASRAPQAALAVVRAMPRRPACAPAVALRAGDPDTA
ATWLRAWPWRLHADYLLLAANQAGDGPQGLAFLNRYLARHGLAALRLRRSDAPLGVTQLTPCGPNAAPASTAVGEARLSV
VIPTFDNALHIRASVESMLQQTRRPDEVLVIDDASRDDTAAIVAALAQVYPGVVRLLRLPHNRGAYFARNLGLAAARGRF
VAFHDADDYAHPQRLELALAPLLADEQLHATTSRCVRLADDGQFGEARTWPLTRWTPISLLMRREVVLHRVGYFDDLRFG
ADSEYVARLRLLLGERHHRLVAQPLSLFGQRAGSLTTSGEAGFDRQGWSGPRIAYQEAWTERHLAHLLRGDALFTPLPAE
VAATLAGLDD

Sequences:

>Translated_490_residues
MDRHPPPERRDVRLPLQGLQRLEHRLLERRAARQPSPLQQLAILLRDAHAPPERPLALCIDLGLVHRARQLMERTRAPLA
LPAAIQLAWLEGDFDALDRCAADPATAAALARASQGVQNRCLSILASRAPQAALAVVRAMPRRPACAPAVALRAGDPDTA
ATWLRAWPWRLHADYLLLAANQAGDGPQGLAFLNRYLARHGLAALRLRRSDAPLGVTQLTPCGPNAAPASTAVGEARLSV
VIPTFDNALHIRASVESMLQQTRRPDEVLVIDDASRDDTAAIVAALAQVYPGVVRLLRLPHNRGAYFARNLGLAAARGRF
VAFHDADDYAHPQRLELALAPLLADEQLHATTSRCVRLADDGQFGEARTWPLTRWTPISLLMRREVVLHRVGYFDDLRFG
ADSEYVARLRLLLGERHHRLVAQPLSLFGQRAGSLTTSGEAGFDRQGWSGPRIAYQEAWTERHLAHLLRGDALFTPLPAE
VAATLAGLDD
>Mature_490_residues
MDRHPPPERRDVRLPLQGLQRLEHRLLERRAARQPSPLQQLAILLRDAHAPPERPLALCIDLGLVHRARQLMERTRAPLA
LPAAIQLAWLEGDFDALDRCAADPATAAALARASQGVQNRCLSILASRAPQAALAVVRAMPRRPACAPAVALRAGDPDTA
ATWLRAWPWRLHADYLLLAANQAGDGPQGLAFLNRYLARHGLAALRLRRSDAPLGVTQLTPCGPNAAPASTAVGEARLSV
VIPTFDNALHIRASVESMLQQTRRPDEVLVIDDASRDDTAAIVAALAQVYPGVVRLLRLPHNRGAYFARNLGLAAARGRF
VAFHDADDYAHPQRLELALAPLLADEQLHATTSRCVRLADDGQFGEARTWPLTRWTPISLLMRREVVLHRVGYFDDLRFG
ADSEYVARLRLLLGERHHRLVAQPLSLFGQRAGSLTTSGEAGFDRQGWSGPRIAYQEAWTERHLAHLLRGDALFTPLPAE
VAATLAGLDD

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=112, Percent_Identity=38.3928571428571, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 53769; Mature: 53769

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRHPPPERRDVRLPLQGLQRLEHRLLERRAARQPSPLQQLAILLRDAHAPPERPLALCI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
DLGLVHRARQLMERTRAPLALPAAIQLAWLEGDFDALDRCAADPATAAALARASQGVQNR
HHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLSILASRAPQAALAVVRAMPRRPACAPAVALRAGDPDTAATWLRAWPWRLHADYLLLAA
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHEEECCCCHHHHHHHHHCCCCCCCCEEEEEE
NQAGDGPQGLAFLNRYLARHGLAALRLRRSDAPLGVTQLTPCGPNAAPASTAVGEARLSV
CCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHCCCEEEE
VIPTFDNALHIRASVESMLQQTRRPDEVLVIDDASRDDTAAIVAALAQVYPGVVRLLRLP
EEECCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
HNRGAYFARNLGLAAARGRFVAFHDADDYAHPQRLELALAPLLADEQLHATTSRCVRLAD
CCCCCHHHHHCCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEECC
DGQFGEARTWPLTRWTPISLLMRREVVLHRVGYFDDLRFGADSEYVARLRLLLGERHHRL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
VAQPLSLFGQRAGSLTTSGEAGFDRQGWSGPRIAYQEAWTERHLAHLLRGDALFTPLPAE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
VAATLAGLDD
HHHHHHCCCC
>Mature Secondary Structure
MDRHPPPERRDVRLPLQGLQRLEHRLLERRAARQPSPLQQLAILLRDAHAPPERPLALCI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
DLGLVHRARQLMERTRAPLALPAAIQLAWLEGDFDALDRCAADPATAAALARASQGVQNR
HHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLSILASRAPQAALAVVRAMPRRPACAPAVALRAGDPDTAATWLRAWPWRLHADYLLLAA
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHEEECCCCHHHHHHHHHCCCCCCCCEEEEEE
NQAGDGPQGLAFLNRYLARHGLAALRLRRSDAPLGVTQLTPCGPNAAPASTAVGEARLSV
CCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHCCCEEEE
VIPTFDNALHIRASVESMLQQTRRPDEVLVIDDASRDDTAAIVAALAQVYPGVVRLLRLP
EEECCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
HNRGAYFARNLGLAAARGRFVAFHDADDYAHPQRLELALAPLLADEQLHATTSRCVRLAD
CCCCCHHHHHCCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEECC
DGQFGEARTWPLTRWTPISLLMRREVVLHRVGYFDDLRFGADSEYVARLRLLLGERHHRL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
VAQPLSLFGQRAGSLTTSGEAGFDRQGWSGPRIAYQEAWTERHLAHLLRGDALFTPLPAE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
VAATLAGLDD
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]