| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is yfiJ [H]
Identifier: 124265775
GI number: 124265775
Start: 610482
End: 611666
Strand: Reverse
Name: yfiJ [H]
Synonym: Mpe_A0582
Alternate gene names: 124265775
Gene position: 611666-610482 (Counterclockwise)
Preceding gene: 124265782
Following gene: 124265774
Centisome position: 15.12
GC content: 70.55
Gene sequence:
>1185_bases ATGCCGGCACCCGACCTGTCCCCTTTGCCCCCCGCCCTGTCCACCGTGCCGCTGCGGCTGCGGGTGCTGCACCTGGAGGA TTCGGAACTCGATCACGAATTGATGCTGGCCCACCTGCGGCGTGGCGGCATCGATCCCGACGCGCTGCGCGTCGAATCCG AGGCCGGGTACCGGGCTGCGCTGGCCGAACCCTGGGACGTGGTGGTCAGCGACTACAACCTGCCGGGCTTCTCGGGCCTG CGCGCCCTGGAGATCCTGCGCGACAGCCGGCTGCTGCTGCCCTTCATCCTGGTCTCGGGCGAGATCGGCGAGCAGGTGGC GGTGCAGGCCATGCTGACCGGCGCCAACGACTACCTGCTGAAGGAAAACCTGGCGCGGCTGGTGCCGGCCCTGCTGCACG CGATCGAAGGCACCGAGGCGCTGCGTGCCAAGCAGGAAGCCGACCTGGCCCTGGGCCAGAGCGAGCAGCGCCTGCGCGAA CTGGCCCAGCACCTGCAAGCGAACATCGAGGCCGAACGCACGGCGATCGCTCGCGAGATCCACGACGACGTGGGCGGCTC GCTGACCGCGCTGAAGTTCGACCTGGCGTGGATCGAGCGGCACGCCCGCGACCCGGCGGTGGCGCAGCGCGCGCAGGGCG CACTGGAGACCGTGACGTTGGCGATCGAGTCGAGCCAGCGCATCATGCACAACCTGCGCCCGGCCATCCTGGAACAAGGC CTGATCGCGGCGCTGCAGTGGATGACCCAGCGCTTCGAGAAGCGCAATGGCGTGGTGACGGTGTTCCGCACCAGCCGCGA CGAGTTGCCGCCGCTGCCGGCGGGCGTCCCGCTGGCTGCCTACCGCACTGCGCAGGAGGCCCTGACCAACATCAGCAAGC ACGCCTACGCCACCCGCGTGGAAGTCGATCTCACGGTCGCCGGCCGCGTGCTGTCGCTCGAGGTCAGCGACAACGGCCGC GGCCTGATCCAGGAGGACCTCGCCAAGGCCCGCTCCTTCGGCATCCGCGGACTGCGTGAACGCGCGGCACAGGTCGGCGG CTGGGTCGACCTCTCCAGCGGACCGGGCGGCACCACCATCATCCTGTCGGTGCCGCTCGAGGCCGGCGGGGATACCGGGC CCGGCGAGTTCGACGGCCTGCAGGACGACCCGGACGACCCGACCTCCTGGGACATGCTGCGGTGA
Upstream 100 bases:
>100_bases CCTCCGGTCGGGTGCGGCTTGGCACAATTCTTCGCCAGCCCTCCGTTCCGCGGTGTCAAGATCACGGGGCCAAACGACCG CCAGTTCGACCCTTCCACCC
Downstream 100 bases:
>100_bases AGGCGGCCGCTGCGACGGGCTGGCCCGACGGGCCGTGACCGCGGTAGAGTGGAAGCATGCAGTCATCCTCCCTCGCAGCG CCGTCATGACCGTCCGCGTC
Product: signal transduction histidine kinase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MPAPDLSPLPPALSTVPLRLRVLHLEDSELDHELMLAHLRRGGIDPDALRVESEAGYRAALAEPWDVVVSDYNLPGFSGL RALEILRDSRLLLPFILVSGEIGEQVAVQAMLTGANDYLLKENLARLVPALLHAIEGTEALRAKQEADLALGQSEQRLRE LAQHLQANIEAERTAIAREIHDDVGGSLTALKFDLAWIERHARDPAVAQRAQGALETVTLAIESSQRIMHNLRPAILEQG LIAALQWMTQRFEKRNGVVTVFRTSRDELPPLPAGVPLAAYRTAQEALTNISKHAYATRVEVDLTVAGRVLSLEVSDNGR GLIQEDLAKARSFGIRGLRERAAQVGGWVDLSSGPGGTTIILSVPLEAGGDTGPGEFDGLQDDPDDPTSWDMLR
Sequences:
>Translated_394_residues MPAPDLSPLPPALSTVPLRLRVLHLEDSELDHELMLAHLRRGGIDPDALRVESEAGYRAALAEPWDVVVSDYNLPGFSGL RALEILRDSRLLLPFILVSGEIGEQVAVQAMLTGANDYLLKENLARLVPALLHAIEGTEALRAKQEADLALGQSEQRLRE LAQHLQANIEAERTAIAREIHDDVGGSLTALKFDLAWIERHARDPAVAQRAQGALETVTLAIESSQRIMHNLRPAILEQG LIAALQWMTQRFEKRNGVVTVFRTSRDELPPLPAGVPLAAYRTAQEALTNISKHAYATRVEVDLTVAGRVLSLEVSDNGR GLIQEDLAKARSFGIRGLRERAAQVGGWVDLSSGPGGTTIILSVPLEAGGDTGPGEFDGLQDDPDDPTSWDMLR >Mature_393_residues PAPDLSPLPPALSTVPLRLRVLHLEDSELDHELMLAHLRRGGIDPDALRVESEAGYRAALAEPWDVVVSDYNLPGFSGLR ALEILRDSRLLLPFILVSGEIGEQVAVQAMLTGANDYLLKENLARLVPALLHAIEGTEALRAKQEADLALGQSEQRLREL AQHLQANIEAERTAIAREIHDDVGGSLTALKFDLAWIERHARDPAVAQRAQGALETVTLAIESSQRIMHNLRPAILEQGL IAALQWMTQRFEKRNGVVTVFRTSRDELPPLPAGVPLAAYRTAQEALTNISKHAYATRVEVDLTVAGRVLSLEVSDNGRG LIQEDLAKARSFGIRGLRERAAQVGGWVDLSSGPGGTTIILSVPLEAGGDTGPGEFDGLQDDPDDPTSWDMLR
Specific function: Member of the two-component regulatory system yfiJ/yfiK. Probably activates yfiK by phosphorylation [H]
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87082311, Length=295, Percent_Identity=28.135593220339, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1787474, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011712 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 42870; Mature: 42739
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPDLSPLPPALSTVPLRLRVLHLEDSELDHELMLAHLRRGGIDPDALRVESEAGYRAA CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEECCCCCEEE LAEPWDVVVSDYNLPGFSGLRALEILRDSRLLLPFILVSGEIGEQVAVQAMLTGANDYLL CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH KENLARLVPALLHAIEGTEALRAKQEADLALGQSEQRLRELAQHLQANIEAERTAIAREI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH HDDVGGSLTALKFDLAWIERHARDPAVAQRAQGALETVTLAIESSQRIMHNLRPAILEQG HHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCHHHEEEEEHHHHHHHHHCCHHHHHHH LIAALQWMTQRFEKRNGVVTVFRTSRDELPPLPAGVPLAAYRTAQEALTNISKHAYATRV HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEE EVDLTVAGRVLSLEVSDNGRGLIQEDLAKARSFGIRGLRERAAQVGGWVDLSSGPGGTTI EEEEEEECEEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCEEE ILSVPLEAGGDTGPGEFDGLQDDPDDPTSWDMLR EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PAPDLSPLPPALSTVPLRLRVLHLEDSELDHELMLAHLRRGGIDPDALRVESEAGYRAA CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEECCCCCEEE LAEPWDVVVSDYNLPGFSGLRALEILRDSRLLLPFILVSGEIGEQVAVQAMLTGANDYLL CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH KENLARLVPALLHAIEGTEALRAKQEADLALGQSEQRLRELAQHLQANIEAERTAIAREI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH HDDVGGSLTALKFDLAWIERHARDPAVAQRAQGALETVTLAIESSQRIMHNLRPAILEQG HHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCHHHEEEEEHHHHHHHHHCCHHHHHHH LIAALQWMTQRFEKRNGVVTVFRTSRDELPPLPAGVPLAAYRTAQEALTNISKHAYATRV HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEE EVDLTVAGRVLSLEVSDNGRGLIQEDLAKARSFGIRGLRERAAQVGGWVDLSSGPGGTTI EEEEEEECEEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCEEE ILSVPLEAGGDTGPGEFDGLQDDPDDPTSWDMLR EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8973323; 9384377 [H]