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The map label for this gene is 124028394

Identifier: 124028394

GI number: 124028394

Start: 1559675

End: 1560391

Strand: Reverse

Name: 124028394

Synonym: Hbut_1548

Alternate gene names: NA

Gene position: 1560391-1559675 (Counterclockwise)

Preceding gene: 124028396

Following gene: 124028393

Centisome position: 93.6

GC content: 56.9

Gene sequence:

>717_bases
ATGGCTGAGGCTAGGCTGCAGCGGCTGCTGAGGGTCTATGTGCTGGATACGAGCGCGCTAACCGATACAAGGCTGAGAAG
CCTCCTCGGGAGTGGAAGCTTGGACGAAGCTGTGAGAAGGTTTGCTGAGCTCATAGCGTCGGTAAGGATAGCCTATGGCG
TGGAGGTATACATGCCGCCAACGGTGTACGAGGAGGCTCGCCGTTTCCTCCTCTCCAATGGAGTCACAGTACAGTCATTC
GAGGCCCTAGCTGCATGGATAACCATTAAGCCCCCAACGAGGCATGAAATAAGGATACCAGCAAGCATAGTGAGGGACTA
CGTGGAGGAGGTTCGTGCTAGGCTGGCAAGGGGGCTTCGTGTAGCAGAGGAGCACGTGCGTAGAGCCTTCGAAGCCGGTG
GCCTCTATGCGGCAGAGACGGCGAGTAGGGAGGCTAGGAGAGAGAAGCTTGGCGCGATAATTCGGGGGCTACGGGAGCGC
TACCGCGAGGCAACAAGGCATGGTATGCTGGACAGTGTTGAGGATCTAGACGCTGTGCTCCTAGCACTGGAGGTTAGGGG
AGTCCTTGTGAGCAATGACGAGGGTGTGAGGAGGTTTGCGGAGGCTCTGGGCGTAATATCAATAGATCCACCTAAGTTCA
TAAGCGTGTTGCAAGGTTTGCTACGCCACTCCAAGACGGGAGGGGTGGCGAGGGAGGAGGCACATAGCACCTCTTGA

Upstream 100 bases:

>100_bases
TATAAAACCCTTCGCATGTAGCGACGTAGACACAGTTAGAGTAGGCTAGGCTACAAGGCATACAGCAGGGAGGCGAGGAT
GCGGGCTAGAGGTGACAGCC

Downstream 100 bases:

>100_bases
CCCCCTCCCAGCCTTCTACCCTATCCGGGGCCGGCCTGGTTGCATGGTGAGCCGTTGGTAGTTGTTGTGACGCCCTCGGT
TCTCCGGGACTCTTCACGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAEARLQRLLRVYVLDTSALTDTRLRSLLGSGSLDEAVRRFAELIASVRIAYGVEVYMPPTVYEEARRFLLSNGVTVQSF
EALAAWITIKPPTRHEIRIPASIVRDYVEEVRARLARGLRVAEEHVRRAFEAGGLYAAETASREARREKLGAIIRGLRER
YREATRHGMLDSVEDLDAVLLALEVRGVLVSNDEGVRRFAEALGVISIDPPKFISVLQGLLRHSKTGGVAREEAHSTS

Sequences:

>Translated_238_residues
MAEARLQRLLRVYVLDTSALTDTRLRSLLGSGSLDEAVRRFAELIASVRIAYGVEVYMPPTVYEEARRFLLSNGVTVQSF
EALAAWITIKPPTRHEIRIPASIVRDYVEEVRARLARGLRVAEEHVRRAFEAGGLYAAETASREARREKLGAIIRGLRER
YREATRHGMLDSVEDLDAVLLALEVRGVLVSNDEGVRRFAEALGVISIDPPKFISVLQGLLRHSKTGGVAREEAHSTS
>Mature_237_residues
AEARLQRLLRVYVLDTSALTDTRLRSLLGSGSLDEAVRRFAELIASVRIAYGVEVYMPPTVYEEARRFLLSNGVTVQSFE
ALAAWITIKPPTRHEIRIPASIVRDYVEEVRARLARGLRVAEEHVRRAFEAGGLYAAETASREARREKLGAIIRGLRERY
REATRHGMLDSVEDLDAVLLALEVRGVLVSNDEGVRRFAEALGVISIDPPKFISVLQGLLRHSKTGGVAREEAHSTS

Specific function: Unknown

COG id: COG1458

COG function: function code R; Predicted DNA-binding protein containing PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0278 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1548_HYPBU (A2BN08)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013714.1
- STRING:   A2BN08
- GeneID:   4782156
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1548
- eggNOG:   arNOG05878
- HOGENOM:   HBG507856
- OMA:   KTPNRYE
- ProtClustDB:   PRK04358
- BioCyc:   HBUT415426:HBUT_1548-MONOMER
- HAMAP:   MF_01078
- InterPro:   IPR014856
- InterPro:   IPR022785
- TIGRFAMs:   TIGR03875

Pfam domain/function: PF08745 UPF0278

EC number: NA

Molecular weight: Translated: 26533; Mature: 26402

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEARLQRLLRVYVLDTSALTDTRLRSLLGSGSLDEAVRRFAELIASVRIAYGVEVYMPP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCC
TVYEEARRFLLSNGVTVQSFEALAAWITIKPPTRHEIRIPASIVRDYVEEVRARLARGLR
HHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
VAEEHVRRAFEAGGLYAAETASREARREKLGAIIRGLRERYREATRHGMLDSVEDLDAVL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LALEVRGVLVSNDEGVRRFAEALGVISIDPPKFISVLQGLLRHSKTGGVAREEAHSTS
HHHHHHHHEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure 
AEARLQRLLRVYVLDTSALTDTRLRSLLGSGSLDEAVRRFAELIASVRIAYGVEVYMPP
CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCC
TVYEEARRFLLSNGVTVQSFEALAAWITIKPPTRHEIRIPASIVRDYVEEVRARLARGLR
HHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
VAEEHVRRAFEAGGLYAAETASREARREKLGAIIRGLRERYREATRHGMLDSVEDLDAVL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LALEVRGVLVSNDEGVRRFAEALGVISIDPPKFISVLQGLLRHSKTGGVAREEAHSTS
HHHHHHHHEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA