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The map label for this gene is 124028396

Identifier: 124028396

GI number: 124028396

Start: 1561311

End: 1562483

Strand: Reverse

Name: 124028396

Synonym: Hbut_1550

Alternate gene names: NA

Gene position: 1562483-1561311 (Counterclockwise)

Preceding gene: 124028397

Following gene: 124028394

Centisome position: 93.72

GC content: 52.43

Gene sequence:

>1173_bases
TTGACTTGGATCAAGAACCCAGAGCCGTGGATGGTTAATCTTGTGGCTGAGAAGCTAGGGCTTGACGTGGAGAGGGTTGA
GACGCTTGCGAGGCATGGTACCATCAGGTTTAGGGGCTATAGGGATGTCGTATACGCGCTGCTTCGGCGAGAGATTGCAG
GCCACCCAGAAGGTACGGTAGTGCTTCTTGAGCGTAATGGTGCTAGGCTGGTGCCTGGCTATCCGCCGATTCAGAGAATG
GTTCTCCCAACAATTGCCCTGCCAAGACACTTCATCGATAAAGTTGTTGTTGAGGAGAAGATGAACGGGTATAATGTGAG
GCTCGTAATGTTCCACAGAAAGCTCCTAGCTGTAACGCGGGGCGGCTTCATATGCCCCTACACTACGGCGAGGCTCGAGA
GACTAATCGGTGGCAGGGTTAGGGAGCTGTTCCGCGAGATAGACCCTGAAACCTACACTATTGCCGGCGAGGTTGTAGGC
CTCGAAAACCCCTACACGAGGTACTTCTACCCGGAGGCTCCACGCTTCGACTACTTCGTCTTCGACCTATTTCATGAGTT
GAAGCCGTTGCCGCCGCTTGAGCGTAACGAGCTGCTGGAAAAGTACGGGTTAAAGCATGTTCGGCTCCTCGGAGTAATAG
ACAAGAATGATGTTGAGATGTTTAAGCAGATAGTTGCAGAACTCGATAGGGAGGGGCGTGAGGGCGTAGTCGCTAAGGAT
CCCGAGTACAGGGTGCCACCGCTAAAATACACCACCTCGGCGGTAAACATAGGCGATGTAAGGTATGGGATGAGATTCTT
CATGGAGGAGGGTCGCTCCTTCCTCTTCTCGAGGCTGCTAAGAGAACTCTTTAGAGCCTATGAGGAGGGGTTTGGCGATG
CCCAGCTCGAGAAGCTTGCTCTAGAGTTTGGCAGAGCAGCCACAGAGCCAGCGCTGGAGTCTATAAGGAAGGTTGCAATG
GGTGATATGCTCTATGAGGAGTTCGAACTGGTATTCGCCGATGAGGTTGAGCTAGAAGAGTTTACAAGCTACATGGCCGA
GCTTGGTGTTGATATAGTTGTGGTTTCAACGTCTAGGGAGGATGAGGGCCTCCGGGCCAGGATGAGGAAGATAAAGGATA
CGTGGATACAACTGCGCAAAGTGCTAGATACTGGTCTGTCGCCGGTAGACTAG

Upstream 100 bases:

>100_bases
CCGTAATGGTAGACTCCCAATCCTTCGGCTTCCACGCAGTTGTTAACGCCGACATCCGTGGGTTTAAACACAATTCTAGA
TCGCCAGAGGTGATTTGGAG

Downstream 100 bases:

>100_bases
CCCACAGATGTCTCCTTAATTTCTCTCAGCCTTTCCCCTGGGCGGCGCCTTGGGCTCTCTGCAGCTGGTTGAGATGTAGG
AGAGGAGGATGTAGGTGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTWIKNPEPWMVNLVAEKLGLDVERVETLARHGTIRFRGYRDVVYALLRREIAGHPEGTVVLLERNGARLVPGYPPIQRM
VLPTIALPRHFIDKVVVEEKMNGYNVRLVMFHRKLLAVTRGGFICPYTTARLERLIGGRVRELFREIDPETYTIAGEVVG
LENPYTRYFYPEAPRFDYFVFDLFHELKPLPPLERNELLEKYGLKHVRLLGVIDKNDVEMFKQIVAELDREGREGVVAKD
PEYRVPPLKYTTSAVNIGDVRYGMRFFMEEGRSFLFSRLLRELFRAYEEGFGDAQLEKLALEFGRAATEPALESIRKVAM
GDMLYEEFELVFADEVELEEFTSYMAELGVDIVVVSTSREDEGLRARMRKIKDTWIQLRKVLDTGLSPVD

Sequences:

>Translated_390_residues
MTWIKNPEPWMVNLVAEKLGLDVERVETLARHGTIRFRGYRDVVYALLRREIAGHPEGTVVLLERNGARLVPGYPPIQRM
VLPTIALPRHFIDKVVVEEKMNGYNVRLVMFHRKLLAVTRGGFICPYTTARLERLIGGRVRELFREIDPETYTIAGEVVG
LENPYTRYFYPEAPRFDYFVFDLFHELKPLPPLERNELLEKYGLKHVRLLGVIDKNDVEMFKQIVAELDREGREGVVAKD
PEYRVPPLKYTTSAVNIGDVRYGMRFFMEEGRSFLFSRLLRELFRAYEEGFGDAQLEKLALEFGRAATEPALESIRKVAM
GDMLYEEFELVFADEVELEEFTSYMAELGVDIVVVSTSREDEGLRARMRKIKDTWIQLRKVLDTGLSPVD
>Mature_389_residues
TWIKNPEPWMVNLVAEKLGLDVERVETLARHGTIRFRGYRDVVYALLRREIAGHPEGTVVLLERNGARLVPGYPPIQRMV
LPTIALPRHFIDKVVVEEKMNGYNVRLVMFHRKLLAVTRGGFICPYTTARLERLIGGRVRELFREIDPETYTIAGEVVGL
ENPYTRYFYPEAPRFDYFVFDLFHELKPLPPLERNELLEKYGLKHVRLLGVIDKNDVEMFKQIVAELDREGREGVVAKDP
EYRVPPLKYTTSAVNIGDVRYGMRFFMEEGRSFLFSRLLRELFRAYEEGFGDAQLEKLALEFGRAATEPALESIRKVAMG
DMLYEEFELVFADEVELEEFTSYMAELGVDIVVVSTSREDEGLRARMRKIKDTWIQLRKVLDTGLSPVD

Specific function: Unknown

COG id: COG1423

COG function: function code L; ATP-dependent DNA ligase, homolog of eukaryotic ligase III

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR001072 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: NA

Molecular weight: Translated: 45191; Mature: 45060

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWIKNPEPWMVNLVAEKLGLDVERVETLARHGTIRFRGYRDVVYALLRREIAGHPEGTV
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCCEE
VLLERNGARLVPGYPPIQRMVLPTIALPRHFIDKVVVEEKMNGYNVRLVMFHRKLLAVTR
EEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC
GGFICPYTTARLERLIGGRVRELFREIDPETYTIAGEVVGLENPYTRYFYPEAPRFDYFV
CCEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEECCCCCCCHHHH
FDLFHELKPLPPLERNELLEKYGLKHVRLLGVIDKNDVEMFKQIVAELDREGREGVVAKD
HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC
PEYRVPPLKYTTSAVNIGDVRYGMRFFMEEGRSFLFSRLLRELFRAYEEGFGDAQLEKLA
CCCCCCCCEEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LEFGRAATEPALESIRKVAMGDMLYEEFELVFADEVELEEFTSYMAELGVDIVVVSTSRE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCC
DEGLRARMRKIKDTWIQLRKVLDTGLSPVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TWIKNPEPWMVNLVAEKLGLDVERVETLARHGTIRFRGYRDVVYALLRREIAGHPEGTV
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCCEE
VLLERNGARLVPGYPPIQRMVLPTIALPRHFIDKVVVEEKMNGYNVRLVMFHRKLLAVTR
EEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC
GGFICPYTTARLERLIGGRVRELFREIDPETYTIAGEVVGLENPYTRYFYPEAPRFDYFV
CCEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEECCCCCCCHHHH
FDLFHELKPLPPLERNELLEKYGLKHVRLLGVIDKNDVEMFKQIVAELDREGREGVVAKD
HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC
PEYRVPPLKYTTSAVNIGDVRYGMRFFMEEGRSFLFSRLLRELFRAYEEGFGDAQLEKLA
CCCCCCCCEEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LEFGRAATEPALESIRKVAMGDMLYEEFELVFADEVELEEFTSYMAELGVDIVVVSTSRE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCC
DEGLRARMRKIKDTWIQLRKVLDTGLSPVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]