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The map label for this gene is 124027454

Identifier: 124027454

GI number: 124027454

Start: 541521

End: 542234

Strand: Direct

Name: 124027454

Synonym: Hbut_0569

Alternate gene names: NA

Gene position: 541521-542234 (Clockwise)

Preceding gene: 124027453

Following gene: 124027455

Centisome position: 32.48

GC content: 52.94

Gene sequence:

>714_bases
ATGCCGCGGAAGGGCAGGGGCGAGCACGAGCCTGTAGTTGCGAGGCTTGAGGTTGCAGGTAAGCGTTTCGAGGTTCTCGT
AAACCCGGACCTTGCTTTTGAGTATAAGCAAGGGAAGCAGGTTAGCCTTGAGGACATGGTTATTAGCGACGCTGTCTACA
CTGATCTGCGTCGAGGCTTGAGAGCATCACCTGAACTCCTACGCAAGGTTTTCGGCACTGATGACGTGGTAAAGATTGCG
GCTGAGATTGTACGTCGTGGAGAACTACAGCTCACTGCCGAGCAGAGGAGGAGGCTGATAGAGGCAAAGAAGAAACAGAT
TATAAGCTACATAGCCCGCAACGCCATAGACCCGAAGACCAAGCTTCCAATTCCACCCGCTAGGATAGAGGCTGCTATGG
AACAGGCGGGCGTAGGTGTAGACCCGTTTAAGAGTGTAGAGGAGCAAGCCCAGCTCATAGTCAAGGCTATAAGCAGGATT
ATCCCGATAAAGATTGCTAAGGCGCTTCTAAGAATAGTTGTGCCGCCCGAGTACTCGCCGAGAGTTGCTGGTGCACTGCA
GAAGCTGGGGGAGGTAAAGCATATGGACTGGAGGACTGATGGGAGCCTCGTAGCGGAGCTGGAGATACCCGCGGGGCTTC
AGCAGGAGGTTATAGACAAGCTTAACAAGCTCACGCAAGGCAATGTGGATGTTAAGATTGTGAGCGTGGTGTAG

Upstream 100 bases:

>100_bases
AACCCTAGAGGTTGGTGTAGCGGATACTAGGACTGGGAGGTTTAGGAAACTGACTAAAGAGGAGCTATTAAAGTATATAG
AAAAGCTTGGTGCCTAGAGA

Downstream 100 bases:

>100_bases
CAGGGCCTTGGCCAGGATATATGTGCAGAATAGGAGCATAGTTGTGCCGGGGGATCTCCTGGCTGAGGGCGAGGATGTGG
TAGTGGAGTCCATCTTTGTT

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MPRKGRGEHEPVVARLEVAGKRFEVLVNPDLAFEYKQGKQVSLEDMVISDAVYTDLRRGLRASPELLRKVFGTDDVVKIA
AEIVRRGELQLTAEQRRRLIEAKKKQIISYIARNAIDPKTKLPIPPARIEAAMEQAGVGVDPFKSVEEQAQLIVKAISRI
IPIKIAKALLRIVVPPEYSPRVAGALQKLGEVKHMDWRTDGSLVAELEIPAGLQQEVIDKLNKLTQGNVDVKIVSVV

Sequences:

>Translated_237_residues
MPRKGRGEHEPVVARLEVAGKRFEVLVNPDLAFEYKQGKQVSLEDMVISDAVYTDLRRGLRASPELLRKVFGTDDVVKIA
AEIVRRGELQLTAEQRRRLIEAKKKQIISYIARNAIDPKTKLPIPPARIEAAMEQAGVGVDPFKSVEEQAQLIVKAISRI
IPIKIAKALLRIVVPPEYSPRVAGALQKLGEVKHMDWRTDGSLVAELEIPAGLQQEVIDKLNKLTQGNVDVKIVSVV
>Mature_236_residues
PRKGRGEHEPVVARLEVAGKRFEVLVNPDLAFEYKQGKQVSLEDMVISDAVYTDLRRGLRASPELLRKVFGTDDVVKIAA
EIVRRGELQLTAEQRRRLIEAKKKQIISYIARNAIDPKTKLPIPPARIEAAMEQAGVGVDPFKSVEEQAQLIVKAISRII
PIKIAKALLRIVVPPEYSPRVAGALQKLGEVKHMDWRTDGSLVAELEIPAGLQQEVIDKLNKLTQGNVDVKIVSVV

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=163, Percent_Identity=29.4478527607362, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25144459, Length=225, Percent_Identity=25.3333333333333, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6323050, Length=180, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24659572, Length=211, Percent_Identity=25.1184834123223, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26346; Mature: 26215

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKGRGEHEPVVARLEVAGKRFEVLVNPDLAFEYKQGKQVSLEDMVISDAVYTDLRRGL
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
RASPELLRKVFGTDDVVKIAAEIVRRGELQLTAEQRRRLIEAKKKQIISYIARNAIDPKT
CCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KLPIPPARIEAAMEQAGVGVDPFKSVEEQAQLIVKAISRIIPIKIAKALLRIVVPPEYSP
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVAGALQKLGEVKHMDWRTDGSLVAELEIPAGLQQEVIDKLNKLTQGNVDVKIVSVV
HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
PRKGRGEHEPVVARLEVAGKRFEVLVNPDLAFEYKQGKQVSLEDMVISDAVYTDLRRGL
CCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
RASPELLRKVFGTDDVVKIAAEIVRRGELQLTAEQRRRLIEAKKKQIISYIARNAIDPKT
CCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KLPIPPARIEAAMEQAGVGVDPFKSVEEQAQLIVKAISRIIPIKIAKALLRIVVPPEYSP
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVAGALQKLGEVKHMDWRTDGSLVAELEIPAGLQQEVIDKLNKLTQGNVDVKIVSVV
HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]