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The map label for this gene is rpl7ae

Identifier: 124027428

GI number: 124027428

Start: 523096

End: 523479

Strand: Direct

Name: rpl7ae

Synonym: Hbut_0543

Alternate gene names: 124027428

Gene position: 523096-523479 (Clockwise)

Preceding gene: 124027427

Following gene: 124027431

Centisome position: 31.38

GC content: 52.6

Gene sequence:

>384_bases
ATGAGCAAGCCGTTCTATGTTAGGTTCGAGGTTCCACCAGAGCTAGCAGAGAAGGCCTACCAGGCACTAGAGATAGCAAG
GAAGACTGGCAAGATAAAGAAGGGCACCAACGAGACCACTAAGTGTGTCGAGCGCGGCCTAGCAAAGCTAGTACTCATAG
CTGAGGATGTAGACCCACCAGAGATCGTTGCTCACCTACCACTACTCTGCGAGGAGAAGAAGATACCCTACGTCTATGTA
CCGAGCAAGAAGAGGCTAGGCGAGGCTGCAGGCATAGAGGTTGCAGCAGCTAGCGCTTGCATCATAGACCCGGGCGAGGC
TAAGAACCTAGTTGAGGAGATCGTAAAGGCTGTGAACGAGCTAAAGACAAAGGCAGCCCAGTAG

Upstream 100 bases:

>100_bases
CATTCAAAGTGGGGCCGCTAGTTTTGTAAACCCTTCCAGGCCTAGAGCCCTAAGCGTACTATGGAGGGGCGACGACCGAG
CCCCGGGAGGAGGATGAGCC

Downstream 100 bases:

>100_bases
CACGCAACTAGAAACCCCTAGCCCATCGTGTCCATGGTTTTTAGAGTATCTCACTAACTACCTCGTTCTCGTTGTCTCGG
GTATGCATATCTTGAATCCA

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSKPFYVRFEVPPELAEKAYQALEIARKTGKIKKGTNETTKCVERGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVYV
PSKKRLGEAAGIEVAAASACIIDPGEAKNLVEEIVKAVNELKTKAAQ

Sequences:

>Translated_127_residues
MSKPFYVRFEVPPELAEKAYQALEIARKTGKIKKGTNETTKCVERGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVYV
PSKKRLGEAAGIEVAAASACIIDPGEAKNLVEEIVKAVNELKTKAAQ
>Mature_126_residues
SKPFYVRFEVPPELAEKAYQALEIARKTGKIKKGTNETTKCVERGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVYVP
SKKRLGEAAGIEVAAASACIIDPGEAKNLVEEIVKAVNELKTKAAQ

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family

Homologues:

Organism=Homo sapiens, GI4826860, Length=80, Percent_Identity=45, Blast_Score=78, Evalue=2e-15,
Organism=Homo sapiens, GI51317376, Length=80, Percent_Identity=45, Blast_Score=78, Evalue=2e-15,
Organism=Homo sapiens, GI8923444, Length=88, Percent_Identity=38.6363636363636, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32565833, Length=132, Percent_Identity=32.5757575757576, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32565827, Length=97, Percent_Identity=37.1134020618557, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17555988, Length=113, Percent_Identity=32.7433628318584, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17535189, Length=110, Percent_Identity=39.0909090909091, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320809, Length=96, Percent_Identity=41.6666666666667, Blast_Score=82, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6319993, Length=113, Percent_Identity=35.3982300884956, Blast_Score=77, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17864298, Length=109, Percent_Identity=40.3669724770642, Blast_Score=86, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21356151, Length=102, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL7A_HYPBU (A2BK92)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001012748.1
- ProteinModelPortal:   A2BK92
- SMR:   A2BK92
- STRING:   A2BK92
- GeneID:   4782134
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_0543
- eggNOG:   arNOG10239
- HOGENOM:   HBG739027
- OMA:   GTNEATK
- PhylomeDB:   A2BK92
- ProtClustDB:   PRK04175
- BioCyc:   HBUT415426:HBUT_0543-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00326
- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR004037
- InterPro:   IPR000948
- PRINTS:   PR00881
- PRINTS:   PR00884
- TIGRFAMs:   TIGR03677

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 13872; Mature: 13741

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPFYVRFEVPPELAEKAYQALEIARKTGKIKKGTNETTKCVERGLAKLVLIAEDVDPP
CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEHEECCCCHH
EIVAHLPLLCEEKKIPYVYVPSKKRLGEAAGIEVAAASACIIDPGEAKNLVEEIVKAVNE
HHHHHCCHHCCCCCCCEEECCCHHHHCHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
LKTKAAQ
HHHHCCC
>Mature Secondary Structure 
SKPFYVRFEVPPELAEKAYQALEIARKTGKIKKGTNETTKCVERGLAKLVLIAEDVDPP
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEHEECCCCHH
EIVAHLPLLCEEKKIPYVYVPSKKRLGEAAGIEVAAASACIIDPGEAKNLVEEIVKAVNE
HHHHHCCHHCCCCCCCEEECCCHHHHCHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
LKTKAAQ
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA