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The map label for this gene is rps28e

Identifier: 124027431

GI number: 124027431

Start: 525330

End: 525575

Strand: Direct

Name: rps28e

Synonym: Hbut_0546

Alternate gene names: 124027431

Gene position: 525330-525575 (Clockwise)

Preceding gene: 124027428

Following gene: 124027432

Centisome position: 31.51

GC content: 52.03

Gene sequence:

>246_bases
TTGAGTCAACGCAAGGAGAAAGAATTCAACATAATAGAGGAGATAGGCTATCCTGCAGAGGTCATACAGATAATCGGCAG
GACTGGCGTCCACGGCGAGGTTATACAGGTGCGTGTAAGAGTTCTTGAGGGCAGGGACAAGGGTCGAGTACTCACGAGGA
ACGTTCTTGGCCCAGTAAGGCTGGGTGACATAGTTATACTCCGCGAGACAGAGCGCGAAGCTAGGAGACTTGGCAGGAGG
AGGTAG

Upstream 100 bases:

>100_bases
AGCCGCATGGCGGTCAGCTGCGCCGTCCAGGAGACAGCCCGGCAACCAACTTAGTTTTATTAACCGTTTCTTCCGGCCGC
TAGCTGGCTGGGGGACGAGG

Downstream 100 bases:

>100_bases
AGGAGCGGCGTAGCGAGGTGATGAGTAGATGCCAGTCGTGCATACGTGCACTTATTGTGGCCGCTCAATAGAGCCAGGCA
CCGGCCTAATGTACGTAAAG

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSQRKEKEFNIIEEIGYPAEVIQIIGRTGVHGEVIQVRVRVLEGRDKGRVLTRNVLGPVRLGDIVILRETEREARRLGRR
R

Sequences:

>Translated_81_residues
MSQRKEKEFNIIEEIGYPAEVIQIIGRTGVHGEVIQVRVRVLEGRDKGRVLTRNVLGPVRLGDIVILRETEREARRLGRR
R
>Mature_80_residues
SQRKEKEFNIIEEIGYPAEVIQIIGRTGVHGEVIQVRVRVLEGRDKGRVLTRNVLGPVRLGDIVILRETEREARRLGRRR

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323294, Length=59, Percent_Identity=59.3220338983051, Blast_Score=63, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324741, Length=59, Percent_Identity=59.3220338983051, Blast_Score=62, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24651257, Length=59, Percent_Identity=59.3220338983051, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS28_HYPBU (A2BK95)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001012751.1
- ProteinModelPortal:   A2BK95
- SMR:   A2BK95
- STRING:   A2BK95
- GeneID:   4782119
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_0546
- eggNOG:   arNOG12932
- HOGENOM:   HBG392125
- OMA:   GMHGEAS
- PhylomeDB:   A2BK95
- ProtClustDB:   PRK04007
- BioCyc:   HBUT415426:HBUT_0546-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00292
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10769
- ProDom:   PD005541

Pfam domain/function: PF01200 Ribosomal_S28e; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 9387; Mature: 9256

Theoretical pI: Translated: 11.54; Mature: 11.54

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRKEKEFNIIEEIGYPAEVIQIIGRTGVHGEVIQVRVRVLEGRDKGRVLTRNVLGPVR
CCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC
LGDIVILRETEREARRLGRRR
CCCEEEEECCHHHHHHCCCCC
>Mature Secondary Structure 
SQRKEKEFNIIEEIGYPAEVIQIIGRTGVHGEVIQVRVRVLEGRDKGRVLTRNVLGPVR
CCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC
LGDIVILRETEREARRLGRRR
CCCEEEEECCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA