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The map label for this gene is 124027340

Identifier: 124027340

GI number: 124027340

Start: 433543

End: 434274

Strand: Reverse

Name: 124027340

Synonym: Hbut_0449

Alternate gene names: NA

Gene position: 434274-433543 (Counterclockwise)

Preceding gene: 124027344

Following gene: 124027336

Centisome position: 26.05

GC content: 52.19

Gene sequence:

>732_bases
TTGCCCATACTCTCCGGGAAGTTGCTAGTACCCGTCGACGTAATAGTTGATAGTCGTGAGGCTTCAAAGAACCAGGATAT
AGTTGAGGGACTGCGGAGCCGTGGACTGCGCGTTGCGGTTCAAGAGTTGGAGGCAGGCGACTACTACCTCCTTGCAACAG
ACCCGTCTAAGGCACTGCTCGTCGAGAGGAAGACTGTTATAGACTTCGCCAACAGTATTAGGGATAACCGTGTCTGGGAC
CAAGCTAAGAGGCTGAGAGAAGCTGCAGCCAGGGAGGGCATAAAACCAGTCATTGTTCTCGAAGGCTGGCTAGGCCTAGT
TGAAAAGAGGACAAGGTGGAACATAGCAGCGGTGTTAAGGGTTATAGATGAACTCGTACTCGACTGGGGCATACCCGTAA
TCCCGACACACAACAAGCAAGCAACAATTGCATGGTTGGCGGCTAAAGCGAGGAGCCTTGGTAGGACCGAGGAGAAACGC
GTTGTGAGGCTGCGTGTAGAGAAGAAGCCAATGAGCCTAGCCGAGCGTATACTCTACGTTGCTGAAGGCCTTGTAGGCCC
AACACTGGCCCGCAGACTTCTCGAAAGGTTTGGGACGCTTCGCCGCATAGCAAACGCTAGTGTGCAGGAGCTAATGTCGG
TGAGGGGTATCGGTGAAAAGAGAGCCCGCGAGATATACTTGATATTCAACACTGAGTGGAACAGTGTTAGCGGAGAAGTT
GACAAGAACTAA

Upstream 100 bases:

>100_bases
TGCAAACCCGACCTGCACAGTCACGGTCTCAACCCGTGCAGCCTATAGCACGGCACCTGATACGAATAGCTCTCCCCGCG
AGGAGCTAGGGAGGAAAGCC

Downstream 100 bases:

>100_bases
AAACAGGGAGTAGGCGGTTCTATGCGTTGAGAGTAGGTGTTAGCTCACCTCCTCTACATGTATGATGCTTACTGGACAAG
ACTCAGCAGCAGAGGTTACA

Product: ERCC4-type nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPILSGKLLVPVDVIVDSREASKNQDIVEGLRSRGLRVAVQELEAGDYYLLATDPSKALLVERKTVIDFANSIRDNRVWD
QAKRLREAAAREGIKPVIVLEGWLGLVEKRTRWNIAAVLRVIDELVLDWGIPVIPTHNKQATIAWLAAKARSLGRTEEKR
VVRLRVEKKPMSLAERILYVAEGLVGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFNTEWNSVSGEV
DKN

Sequences:

>Translated_243_residues
MPILSGKLLVPVDVIVDSREASKNQDIVEGLRSRGLRVAVQELEAGDYYLLATDPSKALLVERKTVIDFANSIRDNRVWD
QAKRLREAAAREGIKPVIVLEGWLGLVEKRTRWNIAAVLRVIDELVLDWGIPVIPTHNKQATIAWLAAKARSLGRTEEKR
VVRLRVEKKPMSLAERILYVAEGLVGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFNTEWNSVSGEV
DKN
>Mature_242_residues
PILSGKLLVPVDVIVDSREASKNQDIVEGLRSRGLRVAVQELEAGDYYLLATDPSKALLVERKTVIDFANSIRDNRVWDQ
AKRLREAAAREGIKPVIVLEGWLGLVEKRTRWNIAAVLRVIDELVLDWGIPVIPTHNKQATIAWLAAKARSLGRTEEKRV
VRLRVEKKPMSLAERILYVAEGLVGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFNTEWNSVSGEVD
KN

Specific function: Unknown

COG id: COG1948

COG function: function code L; ERCC4-type nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR020819
- InterPro:   IPR006166
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR011335
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00270 DEAD; PF02732 ERCC4; PF00271 Helicase_C; PF00633 HHH [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 27422; Mature: 27291

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILSGKLLVPVDVIVDSREASKNQDIVEGLRSRGLRVAVQELEAGDYYLLATDPSKALL
CCCCCCCEEEEHHEEECCCCCCCCHHHHHHHHHCCCEEEHHHCCCCCEEEEEECCCCCHH
VERKTVIDFANSIRDNRVWDQAKRLREAAAREGIKPVIVLEGWLGLVEKRTRWNIAAVLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
VIDELVLDWGIPVIPTHNKQATIAWLAAKARSLGRTEEKRVVRLRVEKKPMSLAERILYV
HHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHH
AEGLVGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFNTEWNSVSGEV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEEECCCCCCCCCC
DKN
CCC
>Mature Secondary Structure 
PILSGKLLVPVDVIVDSREASKNQDIVEGLRSRGLRVAVQELEAGDYYLLATDPSKALL
CCCCCCEEEEHHEEECCCCCCCCHHHHHHHHHCCCEEEHHHCCCCCEEEEEECCCCCHH
VERKTVIDFANSIRDNRVWDQAKRLREAAAREGIKPVIVLEGWLGLVEKRTRWNIAAVLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
VIDELVLDWGIPVIPTHNKQATIAWLAAKARSLGRTEEKRVVRLRVEKKPMSLAERILYV
HHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHH
AEGLVGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFNTEWNSVSGEV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEEECCCCCCCCCC
DKN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]