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The map label for this gene is rps6e

Identifier: 124027333

GI number: 124027333

Start: 426520

End: 427173

Strand: Reverse

Name: rps6e

Synonym: Hbut_0442

Alternate gene names: 124027333

Gene position: 427173-426520 (Counterclockwise)

Preceding gene: 124027336

Following gene: 124027332

Centisome position: 25.62

GC content: 53.36

Gene sequence:

>654_bases
ATGCCCGAGTTCAAGATAGTAATATCGGATCCGGAGGCAAAGGCCGACTTACCGGTCTACAAGGTGAAGGTTAAGGGAGA
CGAGTCAATAGAGTATGGGGACGATGAAAAGAATCAGCGCAAGCTTCCAGTGTGCAAGCTTAACCCCAAGCTACTAGAGA
AACTTAACGCTGTACATGGCATTGTCACGGTTAGGATACGCAAGGAGGACAGAAAGTTCAACTACACGTGCAAGGCCACA
GCCGACGCAAACGTACCCGAGGACACAGTGCACGTCAGCTTGGAGTGGCTAGGCGACAAGGTGGGCGCTGAGGAGGCCGA
GGGCGAGGTCTTTAGAGCAAAGGCCTGGCAGATAACAATTACGAGCCCAGCTGCAGACCAGCTCATAGGGCTAAAGATAG
GAGACACCTTCGACGGAGGTCTCGTAGGCTTACCCGGCTACAAGCTGCTAATCAGAGGCGGGAGCGACAATAGCGGTTTC
CCAATGCTACCATCAATACCAGGTCCTGTGAAGAAGCGTGTGCTACTCTCCGGCCCGCCAGGCTTCCACCCCAGGGAGAA
GGGCGAGCGTCGGAGGAAGACTGTTAGGGGCAACACGATAACACACGACATTGTACAGATAAACACTGTGATTGTATACC
CCAAGAAGGAGTAG

Upstream 100 bases:

>100_bases
CACGGCTAGCGCTCCACGGCCCCTCCCACGGTGCTGGGAGGGGGATGCTGGGCCCAACCAGCTGGGCCCGGGGATGAACC
CAGGCGGGGTGTAGGCTGGA

Downstream 100 bases:

>100_bases
CGTTTGCTAAAACAGCTACCTCTTAGCAGCTAGTTTTCGGTAGTTTCTCCAGGAGGGGCGCACATTGTTTTAGGGGTTGT
TAGGGGTAGCTAGCGGGGGG

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPEFKIVISDPEAKADLPVYKVKVKGDESIEYGDDEKNQRKLPVCKLNPKLLEKLNAVHGIVTVRIRKEDRKFNYTCKAT
ADANVPEDTVHVSLEWLGDKVGAEEAEGEVFRAKAWQITITSPAADQLIGLKIGDTFDGGLVGLPGYKLLIRGGSDNSGF
PMLPSIPGPVKKRVLLSGPPGFHPREKGERRRKTVRGNTITHDIVQINTVIVYPKKE

Sequences:

>Translated_217_residues
MPEFKIVISDPEAKADLPVYKVKVKGDESIEYGDDEKNQRKLPVCKLNPKLLEKLNAVHGIVTVRIRKEDRKFNYTCKAT
ADANVPEDTVHVSLEWLGDKVGAEEAEGEVFRAKAWQITITSPAADQLIGLKIGDTFDGGLVGLPGYKLLIRGGSDNSGF
PMLPSIPGPVKKRVLLSGPPGFHPREKGERRRKTVRGNTITHDIVQINTVIVYPKKE
>Mature_216_residues
PEFKIVISDPEAKADLPVYKVKVKGDESIEYGDDEKNQRKLPVCKLNPKLLEKLNAVHGIVTVRIRKEDRKFNYTCKATA
DANVPEDTVHVSLEWLGDKVGAEEAEGEVFRAKAWQITITSPAADQLIGLKIGDTFDGGLVGLPGYKLLIRGGSDNSGFP
MLPSIPGPVKKRVLLSGPPGFHPREKGERRRKTVRGNTITHDIVQINTVIVYPKKE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_HYPBU (A2BJZ7)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001012653.1
- STRING:   A2BJZ7
- GeneID:   4781855
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_0442
- eggNOG:   arNOG11366
- HOGENOM:   HBG297452
- OMA:   GPPGFHP
- ProtClustDB:   PRK04290
- BioCyc:   HBUT415426:HBUT_0442-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 23992; Mature: 23861

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEFKIVISDPEAKADLPVYKVKVKGDESIEYGDDEKNQRKLPVCKLNPKLLEKLNAVHG
CCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCE
IVTVRIRKEDRKFNYTCKATADANVPEDTVHVSLEWLGDKVGAEEAEGEVFRAKAWQITI
EEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEE
TSPAADQLIGLKIGDTFDGGLVGLPGYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLSGPP
ECCCCCEEEEEEECCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCHHHCEEEEECCC
GFHPREKGERRRKTVRGNTITHDIVQINTVIVYPKKE
CCCCCCHHHHHHHHHCCCCEEEEEEEEEEEEEEECCC
>Mature Secondary Structure 
PEFKIVISDPEAKADLPVYKVKVKGDESIEYGDDEKNQRKLPVCKLNPKLLEKLNAVHG
CCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCE
IVTVRIRKEDRKFNYTCKATADANVPEDTVHVSLEWLGDKVGAEEAEGEVFRAKAWQITI
EEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEE
TSPAADQLIGLKIGDTFDGGLVGLPGYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLSGPP
ECCCCCEEEEEEECCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCHHHCEEEEECCC
GFHPREKGERRRKTVRGNTITHDIVQINTVIVYPKKE
CCCCCCHHHHHHHHHCCCCEEEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA