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The map label for this gene is rimM

Identifier: 124026761

GI number: 124026761

Start: 1700130

End: 1700660

Strand: Direct

Name: rimM

Synonym: NATL1_20561

Alternate gene names: 124026761

Gene position: 1700130-1700660 (Clockwise)

Preceding gene: 124026759

Following gene: 124026762

Centisome position: 91.17

GC content: 35.97

Gene sequence:

>531_bases
ATGTTCGAAAAAGATAAATGGATGTCAATAGGTGAAATTGTTGCTCCGCAAGGTTTAAGAGGAGATCTTCGAATTAAACC
TAGCAGCGACTTTCCTGAAAGATTTACAAAACCTGGGAAGAGATGGATTCAAAAAACTGATGAATTGCCTACTGAAATCA
AATTAACTAAAGGGAAGCTTATTCCAGGTAAGTCAATCTATGTACTTTCTATCGAGGGAGTATCTACTAGAAGTTCTGCA
GAAGAAATTATTGGTTGGAAATTAGTCATACCAATTGATAGCAGACCTATGTTGAGTAAAGATGAGTACCATTACCATGA
TTTAATTGGTTTAGAAGCAAGAAGTGGTCCAAGTAAAGCTCTAATTGGTTATGTAACTGACTTAATCAAAGGAGGGAATG
ACCTTCTAGAGATAGAGTTAGTGGAAGGTAAAAAAGTTTTGGTACCTTTTGTTAAAGAAATTGTCCCAGAAATAGAAATC
AAAGAAAAATGGCTGCTAATCAACCCACCCCCTGGCTTATTGGAACTCTAA

Upstream 100 bases:

>100_bases
TTATTAACAGTTACTGTTGTCCCAGGAAGAATAGGATCGTTTGGATCAGTCATAATTAAGCATATTCAAATAAACTTTTA
AAGAAATTCTACTCATAAAA

Downstream 100 bases:

>100_bases
TAATTATTCGAGTTTTTAATCAGAACTTCAAAAATAGATTGCAAAGTTATTTATGAACATAACTGATAACTCCATAATTC
CTGTAATTCTTAGTGGTGGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKLIPGKSIYVLSIEGVSTRSSA
EEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEI
KEKWLLINPPPGLLEL

Sequences:

>Translated_176_residues
MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKLIPGKSIYVLSIEGVSTRSSA
EEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEI
KEKWLLINPPPGLLEL
>Mature_176_residues
MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKLIPGKSIYVLSIEGVSTRSSA
EEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEI
KEKWLLINPPPGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROM1 (A2C552)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001015876.1
- ProteinModelPortal:   A2C552
- SMR:   A2C552
- STRING:   A2C552
- GeneID:   4779996
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_20561
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   PRK00122
- BioCyc:   PMAR167555:NATL1_20561-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19828; Mature: 19828

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL
CCCCCCCCCCCCEECCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHCCCCCEEEEECCEE
IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKA
CCCCEEEEEEECCCCCCCCHHHHCEEEEEEEECCCCCCCCCCCCCHHEEEEECCCCCCHH
LIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINPPPGLLEL
HHHHHHHHHHCCCCEEEEEEECCCEEHHHHHHHHCCCCEECCEEEEECCCCCCCCC
>Mature Secondary Structure
MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL
CCCCCCCCCCCCEECCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHCCCCCEEEEECCEE
IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKA
CCCCEEEEEEECCCCCCCCHHHHCEEEEEEEECCCCCCCCCCCCCHHEEEEECCCCCCHH
LIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINPPPGLLEL
HHHHHHHHHHCCCCEEEEEEECCCEEHHHHHHHHCCCCEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA