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The map label for this gene is umuD [C]

Identifier: 124025651

GI number: 124025651

Start: 871951

End: 872385

Strand: Reverse

Name: umuD [C]

Synonym: NATL1_09441

Alternate gene names: 124025651

Gene position: 872385-871951 (Counterclockwise)

Preceding gene: 124025652

Following gene: 124025650

Centisome position: 46.78

GC content: 34.02

Gene sequence:

>435_bases
ATGGGTTCAAATCGCTCTCGCTCTTCATCAACAGAAGGCTTGTCGTCACTATTAATTCCAACTATTTCTGCAGGCTTTCC
TTCTCCTGCGGAAGACTACATAGAGCTCGGTATCGATCTAAACAAATACTTAATCAAGAATCCAATAAGTACCTTCTTTC
TACGTGTAAGCGGTAATTCAATGAATAACGCAGGAATTTATAACAACGATTTATTAATCATAGATCGCAGTATAAACCCA
AATCCTGGACATATTGTAGTTGCTCTCTTGGATGGAGAATTCACATTAAAAAGACTTATCAAAAAGCAAGATAGTTATTA
TCTGAAAGCAGATAAAGAAAATTATCCAGCAATAAACTTATATGAATATATAGATATCCAAATATGGGGAGTAGCGATTT
ATTCGATACATGAACTACAACAATCAAAAGTATAA

Upstream 100 bases:

>100_bases
AAACAATCACCCAAGGAGGCCCTTACCACAAGGAATAGGCAGGCCCGAAGGAAGAATAATAGTTCAGGTGTACTATAATG
CATTGTATTGATCTGGTCCT

Downstream 100 bases:

>100_bases
TTATGTCCAAAGTAATACTTCAAATTGATGGGAATAATTTCTATGCTTCGTGTGAACAAATGATCGATCCTTCCATAAAA
GGAAAGGGATTAGTAGTACT

Product: putative SOS mutagenesis protein UmuD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MGSNRSRSSSTEGLSSLLIPTISAGFPSPAEDYIELGIDLNKYLIKNPISTFFLRVSGNSMNNAGIYNNDLLIIDRSINP
NPGHIVVALLDGEFTLKRLIKKQDSYYLKADKENYPAINLYEYIDIQIWGVAIYSIHELQQSKV

Sequences:

>Translated_144_residues
MGSNRSRSSSTEGLSSLLIPTISAGFPSPAEDYIELGIDLNKYLIKNPISTFFLRVSGNSMNNAGIYNNDLLIIDRSINP
NPGHIVVALLDGEFTLKRLIKKQDSYYLKADKENYPAINLYEYIDIQIWGVAIYSIHELQQSKV
>Mature_143_residues
GSNRSRSSSTEGLSSLLIPTISAGFPSPAEDYIELGIDLNKYLIKNPISTFFLRVSGNSMNNAGIYNNDLLIIDRSINPN
PGHIVVALLDGEFTLKRLIKKQDSYYLKADKENYPAINLYEYIDIQIWGVAIYSIHELQQSKV

Specific function: Involved in UV protection and mutation [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S24 family [H]

Homologues:

Organism=Escherichia coli, GI1787431, Length=119, Percent_Identity=39.4957983193277, Blast_Score=97, Evalue=5e-22,
Organism=Escherichia coli, GI1790476, Length=111, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006197
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: 3.4.21.-

Molecular weight: Translated: 16143; Mature: 16011

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSNRSRSSSTEGLSSLLIPTISAGFPSPAEDYIELGIDLNKYLIKNPISTFFLRVSGNS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHCCCEEEEEEEECCC
MNNAGIYNNDLLIIDRSINPNPGHIVVALLDGEFTLKRLIKKQDSYYLKADKENYPAINL
CCCCCEECCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCEEEE
YEYIDIQIWGVAIYSIHELQQSKV
EEEEEEEEEEEEEEHHHHHHHCCC
>Mature Secondary Structure 
GSNRSRSSSTEGLSSLLIPTISAGFPSPAEDYIELGIDLNKYLIKNPISTFFLRVSGNS
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHCCCEEEEEEEECCC
MNNAGIYNNDLLIIDRSINPNPGHIVVALLDGEFTLKRLIKKQDSYYLKADKENYPAINL
CCCCCEECCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCEEEE
YEYIDIQIWGVAIYSIHELQQSKV
EEEEEEEEEEEEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA