| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124024068
Identifier: 124024068
GI number: 124024068
Start: 2094786
End: 2096402
Strand: Reverse
Name: 124024068
Synonym: P9303_23771
Alternate gene names: NA
Gene position: 2096402-2094786 (Counterclockwise)
Preceding gene: 124024072
Following gene: 124024064
Centisome position: 78.15
GC content: 54.85
Gene sequence:
>1617_bases ATGGGTTCCGCTTCATCCTTTGAGGTTTCTAGAGGATTTTCCTCGCAGGTAGAGGAGCGTGTGCTGCTGGTGAGGTTGCC CTGCAATCCCATCTTTCCAATTGGGCCGATTTACCTGGCCGATCACCTGCACAAGTGTTTCCCGGATCTTCCTCAACGGA TTTTGGATTTGGCTGCTTTGCCTGTCCTGGATGTTGAACGGGTGTTGTTGGCCACGATTGATCAGTTTCGCCCCACCCTG CTGGTTTTTTCTTGGAGAGATATCCAGATCTATGCACCGGTGGATGGTCGCACTGGCAATCCGCTGCAGCACTCCTTTGA GGTGTTTTATGCAAGTAATCCTTTGCGACGCCTCCGGGGCGCCTTCGGTGGATTGTTGTTGATGAAAAGCCATTACGGAG AGCTCTGGCGCAATCAGCGACTTGTGCGACATGGGCTGCGAGCTGCTCGTCGCCATGTCAGCCATGCCCGGGCTGTCTTG GGTGGTGGTGCAGTGAGTGTGTTCTATGAGCAACTTGGCCGCTCTTTGCCGAAGGGCACCATCGTGTCGTTGGGGGAAGG GGAGCCCCTATTGGAGAATTTGCTGCGCGGCGTTTCCCTGAATGATCAACGCTGTTTTGTGGTGGGTGAGCCAGTGCGAG CTGGTCTGATTCATGAGCAGCCTGAAAGTCGTCCTAAAACCGCCTGCGATTACGACTACATCTCATCGATATGGCCTCAG TTGAATTGGTACCTAGAGGGTGGTGACTTCTACGTCGGTGTACAGACCAAGCGGGGTTGTCCCCACAATTGTTGCTATTG CGTTTACACCGTTGTGGAGGGGAAACAGGTACGGCTCAATCCTGTCAAAGAGGTGGTGGCGGAGATGCGCCAGCTTTATG ACCGTGGCGTACGTGGCTTTTGGTTCACTGATGCACAGTTCATCCCCGCCCGCCGATACATTGAGGATGCCAAAAATCTT CTGACGGCGATCAAGGCTGAAGGGCTCAATGGAATTCGTTGGGCCGCCTACATCCGTGCAGACAACCTTGATGCCGAGCT TGCGGAGTTGATGGTGGCAACCGGCATGAGTTACTTCGAGATTGGCATTACCTCAGGGTCTCAGGAGCTAGTGCGCAAGA TGCGCATGGGGTACAACCTGCGCACTGTGCTTGAGAACTGTCGGCTGTTAGTCCGCGCTGGCTTCCGCCAACACGTGTCG GTGAACTACTCCTTCAACGTGATTGACGAAAGACCGGAAACGATTCGTCAATCCATCGCCTATCACCGCGAGCTGGAACG GATTTTCGGGCCCGACAAGGTGGAGCCTGCCATCTTTTTCATTGGCCTCCAACCTCACACCCATCTGGAGCAGTATGGCT TTGAACAGGGTTTGATTCAACCCGGCTACAACCCCATGAGCATGATGCCCTGGACGGCTAGGAAGCTGCTCTGGAACCCT GAACCGATGGGAAGTATTTTCGGAAGAATCTGTCTCGAGGCTTTTGAGACTGAGCCTGGCAATTTCGGACGTACCGTGAT GGCCTTGCTTGAGCGGGATTACGGGGTGGCGCCTTTGGAGGAGGCTCTACGGGCTCCAGTGATGGGGCGGGCGGCCTTAG CTAATGCCGTGAGCTGA
Upstream 100 bases:
>100_bases CAGAGACAACGGCTTGACTGATTAGCGCTTAGGAGAAGCGCAGTCATTGTTAGCGTCGCTTTCAGCTTGAGCAATCGCTG AGATCCTGCGCTCTTGATCA
Downstream 100 bases:
>100_bases TAGACGAGTAAGGCAGCCATCGCCAGGATGCCGACCACTCCACCGAGGGGGTTGTCAGCTGGCCCGGTGAGCCAAAGCGG CGACTTAGGGGAAAATTGGA
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 538; Mature: 537
Protein sequence:
>538_residues MGSASSFEVSRGFSSQVEERVLLVRLPCNPIFPIGPIYLADHLHKCFPDLPQRILDLAALPVLDVERVLLATIDQFRPTL LVFSWRDIQIYAPVDGRTGNPLQHSFEVFYASNPLRRLRGAFGGLLLMKSHYGELWRNQRLVRHGLRAARRHVSHARAVL GGGAVSVFYEQLGRSLPKGTIVSLGEGEPLLENLLRGVSLNDQRCFVVGEPVRAGLIHEQPESRPKTACDYDYISSIWPQ LNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQLYDRGVRGFWFTDAQFIPARRYIEDAKNL LTAIKAEGLNGIRWAAYIRADNLDAELAELMVATGMSYFEIGITSGSQELVRKMRMGYNLRTVLENCRLLVRAGFRQHVS VNYSFNVIDERPETIRQSIAYHRELERIFGPDKVEPAIFFIGLQPHTHLEQYGFEQGLIQPGYNPMSMMPWTARKLLWNP EPMGSIFGRICLEAFETEPGNFGRTVMALLERDYGVAPLEEALRAPVMGRAALANAVS
Sequences:
>Translated_538_residues MGSASSFEVSRGFSSQVEERVLLVRLPCNPIFPIGPIYLADHLHKCFPDLPQRILDLAALPVLDVERVLLATIDQFRPTL LVFSWRDIQIYAPVDGRTGNPLQHSFEVFYASNPLRRLRGAFGGLLLMKSHYGELWRNQRLVRHGLRAARRHVSHARAVL GGGAVSVFYEQLGRSLPKGTIVSLGEGEPLLENLLRGVSLNDQRCFVVGEPVRAGLIHEQPESRPKTACDYDYISSIWPQ LNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQLYDRGVRGFWFTDAQFIPARRYIEDAKNL LTAIKAEGLNGIRWAAYIRADNLDAELAELMVATGMSYFEIGITSGSQELVRKMRMGYNLRTVLENCRLLVRAGFRQHVS VNYSFNVIDERPETIRQSIAYHRELERIFGPDKVEPAIFFIGLQPHTHLEQYGFEQGLIQPGYNPMSMMPWTARKLLWNP EPMGSIFGRICLEAFETEPGNFGRTVMALLERDYGVAPLEEALRAPVMGRAALANAVS >Mature_537_residues GSASSFEVSRGFSSQVEERVLLVRLPCNPIFPIGPIYLADHLHKCFPDLPQRILDLAALPVLDVERVLLATIDQFRPTLL VFSWRDIQIYAPVDGRTGNPLQHSFEVFYASNPLRRLRGAFGGLLLMKSHYGELWRNQRLVRHGLRAARRHVSHARAVLG GGAVSVFYEQLGRSLPKGTIVSLGEGEPLLENLLRGVSLNDQRCFVVGEPVRAGLIHEQPESRPKTACDYDYISSIWPQL NWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQLYDRGVRGFWFTDAQFIPARRYIEDAKNLL TAIKAEGLNGIRWAAYIRADNLDAELAELMVATGMSYFEIGITSGSQELVRKMRMGYNLRTVLENCRLLVRAGFRQHVSV NYSFNVIDERPETIRQSIAYHRELERIFGPDKVEPAIFFIGLQPHTHLEQYGFEQGLIQPGYNPMSMMPWTARKLLWNPE PMGSIFGRICLEAFETEPGNFGRTVMALLERDYGVAPLEEALRAPVMGRAALANAVS
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 60832; Mature: 60701
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSASSFEVSRGFSSQVEERVLLVRLPCNPIFPIGPIYLADHLHKCFPDLPQRILDLAAL CCCCCCCCHHCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC PVLDVERVLLATIDQFRPTLLVFSWRDIQIYAPVDGRTGNPLQHSFEVFYASNPLRRLRG CHHHHHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCCCCCCHHCEEEEECCCHHHHHHH AFGGLLLMKSHYGELWRNQRLVRHGLRAARRHVSHARAVLGGGAVSVFYEQLGRSLPKGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC IVSLGEGEPLLENLLRGVSLNDQRCFVVGEPVRAGLIHEQPESRPKTACDYDYISSIWPQ EEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHCCC LNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQLYDRGVRGF EEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHHCCCCEE WFTDAQFIPARRYIEDAKNLLTAIKAEGLNGIRWAAYIRADNLDAELAELMVATGMSYFE EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEE IGITSGSQELVRKMRMGYNLRTVLENCRLLVRAGFRQHVSVNYSFNVIDERPETIRQSIA EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEEEEEEEECCCHHHHHHHHH YHRELERIFGPDKVEPAIFFIGLQPHTHLEQYGFEQGLIQPGYNPMSMMPWTARKLLWNP HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC EPMGSIFGRICLEAFETEPGNFGRTVMALLERDYGVAPLEEALRAPVMGRAALANAVS CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHCCC >Mature Secondary Structure GSASSFEVSRGFSSQVEERVLLVRLPCNPIFPIGPIYLADHLHKCFPDLPQRILDLAAL CCCCCCCHHCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC PVLDVERVLLATIDQFRPTLLVFSWRDIQIYAPVDGRTGNPLQHSFEVFYASNPLRRLRG CHHHHHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCCCCCCHHCEEEEECCCHHHHHHH AFGGLLLMKSHYGELWRNQRLVRHGLRAARRHVSHARAVLGGGAVSVFYEQLGRSLPKGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC IVSLGEGEPLLENLLRGVSLNDQRCFVVGEPVRAGLIHEQPESRPKTACDYDYISSIWPQ EEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHCCC LNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQLYDRGVRGF EEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHHCCCCEE WFTDAQFIPARRYIEDAKNLLTAIKAEGLNGIRWAAYIRADNLDAELAELMVATGMSYFE EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEE IGITSGSQELVRKMRMGYNLRTVLENCRLLVRAGFRQHVSVNYSFNVIDERPETIRQSIA EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEEEEEEEECCCHHHHHHHHH YHRELERIFGPDKVEPAIFFIGLQPHTHLEQYGFEQGLIQPGYNPMSMMPWTARKLLWNP HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC EPMGSIFGRICLEAFETEPGNFGRTVMALLERDYGVAPLEEALRAPVMGRAALANAVS CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]