| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is dacB [H]
Identifier: 124023202
GI number: 124023202
Start: 1301260
End: 1302579
Strand: Reverse
Name: dacB [H]
Synonym: P9303_14981
Alternate gene names: 124023202
Gene position: 1302579-1301260 (Counterclockwise)
Preceding gene: 124023203
Following gene: 124023199
Centisome position: 48.56
GC content: 51.89
Gene sequence:
>1320_bases ATGAAGATTATCCCTGCAAGTTTCCAGATCACTAAGAGAACCCATTCTCAATTGTTAATCCGAATTCTTGGAGCTGGGGG AATCCTGATCGGTTCTAATGTGAATGCAGCCCCAACTGTTCTTTCACCACCCCCTCCAGTTGCCGTCCAGGGCTGGCCTT CTCTTCAATCTGGGCGACTCTGCCCTTCCTTGCAAAGGAGTTTCAAATCCTTACTCGGCCAGGGCTCATCGGCATGGAGC GTGAGCGTCGTAGATCGTCACGGTCAGCTCCTTGCAGACATCAACGGAACTGTTGCCAAAGTTCCAGCCTCCAATCAGAA GTTGATTACAACGGCCTTTGCGCTCGATAAGCTCGGCCCTGATTTCAAGTTGCGCACCCAACTATTGCGACGCCCTGATG GGGTACTTGAAATCAGTGGTGAAGGAGATCCTGATCTAGGTATCACAGAGATACAACGCTTTGCGATGGCAGCTCTTGGT CAGGGTGGTTCTCGCACGTTTCGTTCTCACGACGATCTCCAATTACTGATCCGTGAGGAGCCTCAACAACGCTGGTGGCC AAGTGATTGGCACCCAGCTGACCGCATTTATGCCTATGGAGCACCGATCACCCGTCTTGCACTAACAAGCAATGCCCTTG ATGTGGCTGTGACCAATCCAATTGGTCGTTTACAACGCTTGCTAGAGCGCGAAATACATCGGCAGGGGGGCAAAGCTCAT TTAAGCCTTGTCAACCACGACCAGGTGAAGACAAGTTCTGCCCAGTCCGTTCTTCTTCATGAGGAAGATTCCGCACCGAT GCATGCCTTGGTGAGTCTTGCTAATGCGGAGAGCCATAACTTCACGGCAGAGGTGCTGCTTCGACACGCCGCTGAAAGCT GGGATGTGAGGCTTGCCTCCAGGGAGGCTATGCGCTGGATGCAAAGACAAAATCTTCCTCTGACAGGGCTACGCATAGCC GACGGCAGCGGGCTCTCAAGGAACAACCGAATGAGCAGCCAAACTCTGGCGACTTTGTTGATGCGTATGGGACATCACCC TCTTGCTCCCTACTATCAAGCCTCAATGGCCATCGCAGGACAGCGTGGAACGTTGCGCAAACTGTTTAGAGGTACTTCCC TAGAAGGGAAATTCTGGGGAAAAACAGGCACTCTCAATGGAGTGCGTTCTATCTCAGGAATTCTTGAGACAGTAGATGGA CCACGCTACGTGAGTGCAATAGCTAATGGCGCCAGCTCACCAAATAGAACAATCGGCTTGTTGTTGAAGGCTACCCAACG CTTCAGCCCGTGTTCTTCATCGCTCTCAACTTCGAATTAG
Upstream 100 bases:
>100_bases GAGTTGTGTTAGCTGGAACAAAACTCAAAATTGGCACACCAGTTGAGCTAGAGGGATCCACCTATCGAATTAACGGAACC GTGAGTGGTGTCAGTGTTCA
Downstream 100 bases:
>100_bases CTCTACGCCCCCGGTTGATCGGCACGGCCTTGTCTGTGTGTTGGTCAGTTGAACCGCGACTTTCATGACTGCTGATGGTT TGGATTTTCACCAGCTCTTG
Product: D-Ala-D-Ala carboxypeptidase 3 (S13) family protein
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein; PBP [H]
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MKIIPASFQITKRTHSQLLIRILGAGGILIGSNVNAAPTVLSPPPPVAVQGWPSLQSGRLCPSLQRSFKSLLGQGSSAWS VSVVDRHGQLLADINGTVAKVPASNQKLITTAFALDKLGPDFKLRTQLLRRPDGVLEISGEGDPDLGITEIQRFAMAALG QGGSRTFRSHDDLQLLIREEPQQRWWPSDWHPADRIYAYGAPITRLALTSNALDVAVTNPIGRLQRLLEREIHRQGGKAH LSLVNHDQVKTSSAQSVLLHEEDSAPMHALVSLANAESHNFTAEVLLRHAAESWDVRLASREAMRWMQRQNLPLTGLRIA DGSGLSRNNRMSSQTLATLLMRMGHHPLAPYYQASMAIAGQRGTLRKLFRGTSLEGKFWGKTGTLNGVRSISGILETVDG PRYVSAIANGASSPNRTIGLLLKATQRFSPCSSSLSTSN
Sequences:
>Translated_439_residues MKIIPASFQITKRTHSQLLIRILGAGGILIGSNVNAAPTVLSPPPPVAVQGWPSLQSGRLCPSLQRSFKSLLGQGSSAWS VSVVDRHGQLLADINGTVAKVPASNQKLITTAFALDKLGPDFKLRTQLLRRPDGVLEISGEGDPDLGITEIQRFAMAALG QGGSRTFRSHDDLQLLIREEPQQRWWPSDWHPADRIYAYGAPITRLALTSNALDVAVTNPIGRLQRLLEREIHRQGGKAH LSLVNHDQVKTSSAQSVLLHEEDSAPMHALVSLANAESHNFTAEVLLRHAAESWDVRLASREAMRWMQRQNLPLTGLRIA DGSGLSRNNRMSSQTLATLLMRMGHHPLAPYYQASMAIAGQRGTLRKLFRGTSLEGKFWGKTGTLNGVRSISGILETVDG PRYVSAIANGASSPNRTIGLLLKATQRFSPCSSSLSTSN >Mature_439_residues MKIIPASFQITKRTHSQLLIRILGAGGILIGSNVNAAPTVLSPPPPVAVQGWPSLQSGRLCPSLQRSFKSLLGQGSSAWS VSVVDRHGQLLADINGTVAKVPASNQKLITTAFALDKLGPDFKLRTQLLRRPDGVLEISGEGDPDLGITEIQRFAMAALG QGGSRTFRSHDDLQLLIREEPQQRWWPSDWHPADRIYAYGAPITRLALTSNALDVAVTNPIGRLQRLLEREIHRQGGKAH LSLVNHDQVKTSSAQSVLLHEEDSAPMHALVSLANAESHNFTAEVLLRHAAESWDVRLASREAMRWMQRQNLPLTGLRIA DGSGLSRNNRMSSQTLATLLMRMGHHPLAPYYQASMAIAGQRGTLRKLFRGTSLEGKFWGKTGTLNGVRSISGILETVDG PRYVSAIANGASSPNRTIGLLLKATQRFSPCSSSLSTSN
Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=212, Percent_Identity=28.3018867924528, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 47716; Mature: 47716
Theoretical pI: Translated: 10.96; Mature: 10.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIPASFQITKRTHSQLLIRILGAGGILIGSNVNAAPTVLSPPPPVAVQGWPSLQSGRL CEECCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC CPSLQRSFKSLLGQGSSAWSVSVVDRHGQLLADINGTVAKVPASNQKLITTAFALDKLGP CHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCCEEEHHHHHHHHCCC DFKLRTQLLRRPDGVLEISGEGDPDLGITEIQRFAMAALGQGGSRTFRSHDDLQLLIREE CHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC PQQRWWPSDWHPADRIYAYGAPITRLALTSNALDVAVTNPIGRLQRLLEREIHRQGGKAH CHHCCCCCCCCCCCCEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCEE LSLVNHDQVKTSSAQSVLLHEEDSAPMHALVSLANAESHNFTAEVLLRHAAESWDVRLAS EEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEHHH REAMRWMQRQNLPLTGLRIADGSGLSRNNRMSSQTLATLLMRMGHHPLAPYYQASMAIAG HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEEC QRGTLRKLFRGTSLEGKFWGKTGTLNGVRSISGILETVDGPRYVSAIANGASSPNRTIGL CCHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEH LLKATQRFSPCSSSLSTSN EEHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKIIPASFQITKRTHSQLLIRILGAGGILIGSNVNAAPTVLSPPPPVAVQGWPSLQSGRL CEECCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC CPSLQRSFKSLLGQGSSAWSVSVVDRHGQLLADINGTVAKVPASNQKLITTAFALDKLGP CHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCCEEEHHHHHHHHCCC DFKLRTQLLRRPDGVLEISGEGDPDLGITEIQRFAMAALGQGGSRTFRSHDDLQLLIREE CHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC PQQRWWPSDWHPADRIYAYGAPITRLALTSNALDVAVTNPIGRLQRLLEREIHRQGGKAH CHHCCCCCCCCCCCCEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCEE LSLVNHDQVKTSSAQSVLLHEEDSAPMHALVSLANAESHNFTAEVLLRHAAESWDVRLAS EEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEHHH REAMRWMQRQNLPLTGLRIADGSGLSRNNRMSSQTLATLLMRMGHHPLAPYYQASMAIAG HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEEC QRGTLRKLFRGTSLEGKFWGKTGTLNGVRSISGILETVDGPRYVSAIANGASSPNRTIGL CCHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEH LLKATQRFSPCSSSLSTSN EEHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1554361; 7305936 [H]