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The map label for this gene is yebA [H]

Identifier: 124023170

GI number: 124023170

Start: 1261676

End: 1262677

Strand: Reverse

Name: yebA [H]

Synonym: P9303_14661

Alternate gene names: 124023170

Gene position: 1262677-1261676 (Counterclockwise)

Preceding gene: 124023171

Following gene: 124023168

Centisome position: 47.07

GC content: 45.11

Gene sequence:

>1002_bases
ATGAAGCCCCTGTTGTTGCTTATCTCTTCCTTTGCAGCACCAGTGCTTGCTTTAGGGAATCTTGGGTCCTTGCCTGGCTA
TGCAGATAGTGCTGTACAGGAGAAGGTCAAGATCTCAAGCACAACCTCACAGCAACTGATATGGATAAAAGTTGCCCTAC
CAGTAACCATAGAACAATTAGCAGGCAAACTTGGGCTGAAAGCGACTGAACTGTCAAAACTCAATAAAAAGTCATCCAAT
ACAGAACTAACCAAAGGTAGTTGGATTGTTTTGCCAAGATCTGCTCACAACCAATTGAGGCGTATCAGTTACCTAGATTC
TGAGCAGGTGTTGCTGCATAACCCTCGTAACAGTAAAAACCAACTAAATAACAATCGATTGAGTCGACTGCTTGATGAAA
CTAAGAAAAAAAACACGTTGTATTCGTTGAATGATCACAATAAGAATACAAATCGGGTACAGAACCAAACAAAAGTAAGT
AGCAACAACATCCTTAAGAAGGAGTGCTCCCTTGAGTCTCCATGCAATTGCCCCACCTGCTTAGATGTTGAATCACCAGA
GAGCACAGTAGATCTGTTCACCAGAAGTAATGACATGCTTCAGCTAGGAAGCATTGATTCTGATTCCTACATATGGCCTA
CTAAAGGTGTTTTCACATCTGGATTCGGATGGAGGTGGGGGAGAATGCATCAAGGTATCGATATCGCCAATAAAGTGGGC
ACTCCCGTTTTTGCAGCAAAAGACGGAATAGTCACCTATGCCGGATGGAGGGGGGCCTACGGCTACCTCGTAGAAATTGC
ACATGGTGGCGGCTCCACAACTCGCTATGCCCATAACAATCAGATTTTGGTGCGCAGTGGTCAGTTCATACCGCAAGGAG
CAACGATCTCGAAGATGGGCAGCACAGGTCGGAGCACTGGTCCACATCTCCATTTTGAGATCAGAAAGAAGGGTGGCTTA
GCAATGAATCCAGTCACGTTGCTTCCATCGAATAAGGTCTGA

Upstream 100 bases:

>100_bases
CTTCTGCCCCCCCTTGCCTAATCGAGGTGAGATCAGCTAACTTCTCCCGGACTCCAGCCAAGTTCGGCTTGATAGGGGTT
TTGAACATCGACTTTATTGA

Downstream 100 bases:

>100_bases
CCAGAGAGAGGTCCATCGTTTATTGTTATTAACGACAAGGCTCGGTAGCTCAGCTGGTTAGAGCGTGGGATTCATAACCC
CAAGGTCGGGAGTTCAAGTC

Product: M23/M37 familypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVQEKVKISSTTSQQLIWIKVALPVTIEQLAGKLGLKATELSKLNKKSSN
TELTKGSWIVLPRSAHNQLRRISYLDSEQVLLHNPRNSKNQLNNNRLSRLLDETKKKNTLYSLNDHNKNTNRVQNQTKVS
SNNILKKECSLESPCNCPTCLDVESPESTVDLFTRSNDMLQLGSIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANKVG
TPVFAAKDGIVTYAGWRGAYGYLVEIAHGGGSTTRYAHNNQILVRSGQFIPQGATISKMGSTGRSTGPHLHFEIRKKGGL
AMNPVTLLPSNKV

Sequences:

>Translated_333_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVQEKVKISSTTSQQLIWIKVALPVTIEQLAGKLGLKATELSKLNKKSSN
TELTKGSWIVLPRSAHNQLRRISYLDSEQVLLHNPRNSKNQLNNNRLSRLLDETKKKNTLYSLNDHNKNTNRVQNQTKVS
SNNILKKECSLESPCNCPTCLDVESPESTVDLFTRSNDMLQLGSIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANKVG
TPVFAAKDGIVTYAGWRGAYGYLVEIAHGGGSTTRYAHNNQILVRSGQFIPQGATISKMGSTGRSTGPHLHFEIRKKGGL
AMNPVTLLPSNKV
>Mature_333_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVQEKVKISSTTSQQLIWIKVALPVTIEQLAGKLGLKATELSKLNKKSSN
TELTKGSWIVLPRSAHNQLRRISYLDSEQVLLHNPRNSKNQLNNNRLSRLLDETKKKNTLYSLNDHNKNTNRVQNQTKVS
SNNILKKECSLESPCNCPTCLDVESPESTVDLFTRSNDMLQLGSIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANKVG
TPVFAAKDGIVTYAGWRGAYGYLVEIAHGGGSTTRYAHNNQILVRSGQFIPQGATISKMGSTGRSTGPHLHFEIRKKGGL
AMNPVTLLPSNKV

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=85, Percent_Identity=51.7647058823529, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=45.8333333333333, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87082174, Length=122, Percent_Identity=40.1639344262295, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082297, Length=165, Percent_Identity=32.1212121212121, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 36542; Mature: 36542

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVQEKVKISSTTSQQLIWIKVALPVTIEQL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCCCCCEEEEEEEECCEEHHHH
AGKLGLKATELSKLNKKSSNTELTKGSWIVLPRSAHNQLRRISYLDSEQVLLHNPRNSKN
HHHHCCCHHHHHHHHCCCCCCEEECCCEEEEECHHHHHHHHHHHCCCCCEEEECCCCCHH
QLNNNRLSRLLDETKKKNTLYSLNDHNKNTNRVQNQTKVSSNNILKKECSLESPCNCPTC
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCEEHHHCCCCCCCCCCEE
LDVESPESTVDLFTRSNDMLQLGSIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANKVG
ECCCCCCCCEEEEECCCCEEEECCCCCCCEECCCCCCEECCCCCCHHHHHCCCCHHHHCC
TPVFAAKDGIVTYAGWRGAYGYLVEIAHGGGSTTRYAHNNQILVRSGQFIPQGATISKMG
CCEEEECCCEEEEECCCCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCCCCHHHCC
STGRSTGPHLHFEIRKKGGLAMNPVTLLPSNKV
CCCCCCCCEEEEEEECCCCEEECCEEECCCCCC
>Mature Secondary Structure
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVQEKVKISSTTSQQLIWIKVALPVTIEQL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCCCCCEEEEEEEECCEEHHHH
AGKLGLKATELSKLNKKSSNTELTKGSWIVLPRSAHNQLRRISYLDSEQVLLHNPRNSKN
HHHHCCCHHHHHHHHCCCCCCEEECCCEEEEECHHHHHHHHHHHCCCCCEEEECCCCCHH
QLNNNRLSRLLDETKKKNTLYSLNDHNKNTNRVQNQTKVSSNNILKKECSLESPCNCPTC
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCEEHHHCCCCCCCCCCEE
LDVESPESTVDLFTRSNDMLQLGSIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANKVG
ECCCCCCCCEEEEECCCCEEEECCCCCCCEECCCCCCEECCCCCCHHHHHCCCCHHHHCC
TPVFAAKDGIVTYAGWRGAYGYLVEIAHGGGSTTRYAHNNQILVRSGQFIPQGATISKMG
CCEEEECCCEEEEECCCCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCCCCHHHCC
STGRSTGPHLHFEIRKKGGLAMNPVTLLPSNKV
CCCCCCCCEEEEEEECCCCEEECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]