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The map label for this gene is ygeR [H]

Identifier: 124023168

GI number: 124023168

Start: 1259803

End: 1260885

Strand: Reverse

Name: ygeR [H]

Synonym: P9303_14641

Alternate gene names: 124023168

Gene position: 1260885-1259803 (Counterclockwise)

Preceding gene: 124023170

Following gene: 124023166

Centisome position: 47.0

GC content: 47.55

Gene sequence:

>1083_bases
TTGGCCTCCATGAACTCGCTGCCGTTGCTGATCTCAACCATCGCCGCGCCAGTACTTGCACTCGGGACACTCAACCAACT
GCCTGGTGAAGCCAGTAAATATCATCATCCCGCCTCCCATCCATTACCACCACCTGTTCTCCCTCAGACTGATGGACAGA
TATGGGTCAAAATCAACAAACCAGCAACGATTAAATTCATTGCTCATCAGCTTGGCATCTCTTGGTCTGAGATTTCAGCG
CTCAATGATCATTCATCAGCAAACAGGCTGATGGCCGGCAGTTGGATTGTTTTACCTGTGTCAGCTATGGCTCGGTTGCA
GCAATCCAAGTCTTTAGACATAACAACAGTCAGCCACAACCAGCCGCCAGTGACCGCCCCGGCTCCACCCGCAAGCTTGG
TCACAATACAAAGCGGAGACTCTATTGCATCAATTGCCAAACAGCATGGACAAACACATCAGAGGATTCGTCAGCTAAAT
CCAGGTCTTGAATTCAATCAACTCACAGTGGGTAGGAAAATTCGAGTTGCCAAGGCAACGCGTCCTCAGAAGACGACGTT
AACGACAAGTCTTGGCACTAACAACCTTCAATCCCTATCTCTACTCAGTAATGGAGGTGGATGGATAGATCTAGGTGACA
CGAACTCTTATATTTGGCCCACAAAAGGTGTAATCACCTCAGGCTATGGCTGGCGTTGGGGAAGAATGCATCAAGGTATT
GATATAGCGAATAAGGTCAACACACCTATCCTTTCGGCAAAAGGCGGCATTGTTTCCTATGCGGGCTGGAAAGGAGCTTA
CGGATATCTTGTGGAAATAGCACATGCAAACGGGGATTCAACTCGTTATGCTCACAACAATCGACTACTTGTTAAAAAAG
GGCAGATCGTGCCCCAAGGAGCCAAAATCGCAACAATGGGGAGCACAGGACGTAGCACTGGGCCTCACCTACACTTTGAG
ATAAGGAAGAAGAGTGGTACAGCAATCAATCCAGCAAACCTCCTACCATCAAAAATAGTAACAACAGTGCCCACTTTTCA
CTATTGCTATCATCACAAATCCTTCCACGAACATCATGTATGA

Upstream 100 bases:

>100_bases
CATGAAAGCCAATCAAGCAACCCTTGCGGATCTCTAATTCAAACGTTAACTTTCGCGCGCACTCCTCAAGGCTGAATGTC
TAAGGGGTACATCACGTTGA

Downstream 100 bases:

>100_bases
TTAGACATATAAGGCTTTCGTGAGACCATTTAGCCTATTTTTACTAGGGAATTATTGAGATGCTAGCGATTACAAGTCTG
TTGTTGCAAGTATGTATTCA

Product: LysM motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MASMNSLPLLISTIAAPVLALGTLNQLPGEASKYHHPASHPLPPPVLPQTDGQIWVKINKPATIKFIAHQLGISWSEISA
LNDHSSANRLMAGSWIVLPVSAMARLQQSKSLDITTVSHNQPPVTAPAPPASLVTIQSGDSIASIAKQHGQTHQRIRQLN
PGLEFNQLTVGRKIRVAKATRPQKTTLTTSLGTNNLQSLSLLSNGGGWIDLGDTNSYIWPTKGVITSGYGWRWGRMHQGI
DIANKVNTPILSAKGGIVSYAGWKGAYGYLVEIAHANGDSTRYAHNNRLLVKKGQIVPQGAKIATMGSTGRSTGPHLHFE
IRKKSGTAINPANLLPSKIVTTVPTFHYCYHHKSFHEHHV

Sequences:

>Translated_360_residues
MASMNSLPLLISTIAAPVLALGTLNQLPGEASKYHHPASHPLPPPVLPQTDGQIWVKINKPATIKFIAHQLGISWSEISA
LNDHSSANRLMAGSWIVLPVSAMARLQQSKSLDITTVSHNQPPVTAPAPPASLVTIQSGDSIASIAKQHGQTHQRIRQLN
PGLEFNQLTVGRKIRVAKATRPQKTTLTTSLGTNNLQSLSLLSNGGGWIDLGDTNSYIWPTKGVITSGYGWRWGRMHQGI
DIANKVNTPILSAKGGIVSYAGWKGAYGYLVEIAHANGDSTRYAHNNRLLVKKGQIVPQGAKIATMGSTGRSTGPHLHFE
IRKKSGTAINPANLLPSKIVTTVPTFHYCYHHKSFHEHHV
>Mature_359_residues
ASMNSLPLLISTIAAPVLALGTLNQLPGEASKYHHPASHPLPPPVLPQTDGQIWVKINKPATIKFIAHQLGISWSEISAL
NDHSSANRLMAGSWIVLPVSAMARLQQSKSLDITTVSHNQPPVTAPAPPASLVTIQSGDSIASIAKQHGQTHQRIRQLNP
GLEFNQLTVGRKIRVAKATRPQKTTLTTSLGTNNLQSLSLLSNGGGWIDLGDTNSYIWPTKGVITSGYGWRWGRMHQGID
IANKVNTPILSAKGGIVSYAGWKGAYGYLVEIAHANGDSTRYAHNNRLLVKKGQIVPQGAKIATMGSTGRSTGPHLHFEI
RKKSGTAINPANLLPSKIVTTVPTFHYCYHHKSFHEHHV

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=258, Percent_Identity=33.7209302325581, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081989, Length=179, Percent_Identity=36.3128491620112, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789099, Length=122, Percent_Identity=44.2622950819672, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082297, Length=139, Percent_Identity=35.2517985611511, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 38863; Mature: 38732

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASMNSLPLLISTIAAPVLALGTLNQLPGEASKYHHPASHPLPPPVLPQTDGQIWVKINK
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
PATIKFIAHQLGISWSEISALNDHSSANRLMAGSWIVLPVSAMARLQQSKSLDITTVSHN
CCEEEEEHHHHCCCHHHHHHCCCCCCCCEEEECCEEEEEHHHHHHHHHCCCCEEEEECCC
QPPVTAPAPPASLVTIQSGDSIASIAKQHGQTHQRIRQLNPGLEFNQLTVGRKIRVAKAT
CCCCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCEEEEEECC
RPQKTTLTTSLGTNNLQSLSLLSNGGGWIDLGDTNSYIWPTKGVITSGYGWRWGRMHQGI
CCCCEEEEEECCCCCCCEEEEEECCCCEEEECCCCCEEECCCCEEECCCCCCCCCCCCCC
DIANKVNTPILSAKGGIVSYAGWKGAYGYLVEIAHANGDSTRYAHNNRLLVKKGQIVPQG
CHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCC
AKIATMGSTGRSTGPHLHFEIRKKSGTAINPANLLPSKIVTTVPTFHYCYHHKSFHEHHV
CEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHCCHHHHHHCCHHHHHHCCCCHHHCCC
>Mature Secondary Structure 
ASMNSLPLLISTIAAPVLALGTLNQLPGEASKYHHPASHPLPPPVLPQTDGQIWVKINK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
PATIKFIAHQLGISWSEISALNDHSSANRLMAGSWIVLPVSAMARLQQSKSLDITTVSHN
CCEEEEEHHHHCCCHHHHHHCCCCCCCCEEEECCEEEEEHHHHHHHHHCCCCEEEEECCC
QPPVTAPAPPASLVTIQSGDSIASIAKQHGQTHQRIRQLNPGLEFNQLTVGRKIRVAKAT
CCCCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCEEEEEECC
RPQKTTLTTSLGTNNLQSLSLLSNGGGWIDLGDTNSYIWPTKGVITSGYGWRWGRMHQGI
CCCCEEEEEECCCCCCCEEEEEECCCCEEEECCCCCEEECCCCEEECCCCCCCCCCCCCC
DIANKVNTPILSAKGGIVSYAGWKGAYGYLVEIAHANGDSTRYAHNNRLLVKKGQIVPQG
CHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCC
AKIATMGSTGRSTGPHLHFEIRKKSGTAINPANLLPSKIVTTVPTFHYCYHHKSFHEHHV
CEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHCCHHHHHHCCHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]