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The map label for this gene is yhdX [H]

Identifier: 124022921

GI number: 124022921

Start: 1056999

End: 1057892

Strand: Reverse

Name: yhdX [H]

Synonym: P9303_12141

Alternate gene names: 124022921

Gene position: 1057892-1056999 (Counterclockwise)

Preceding gene: 124022922

Following gene: 124022920

Centisome position: 39.43

GC content: 50.34

Gene sequence:

>894_bases
ATGAAGCGCTCGCAGCACTTTTGCTTGCAAGTTGGCGTCGCTCTCGCTCTGCTGACCATTCTTGGCGTGTTGATCAACAA
TCTCGCTGTGAATCTGATCCGCACGGACATGGGGCTCAGCTTTCTTTGGTTAGGACGACCTGCAGGCTTTGCTCTAGCTG
AACATCCGCTGTCTTATAGGCCTTCGGATAGTTATGCCTGGGCTCTTTGCATGGGCTGGTTAAACAGCCTCAAGGTCATC
CTTTGCGGCCTTGTTCTGGCCACGGTGATTGGAGTGCTTGCAGGGGCTGCCAGAAGTAGCAGCAATCTGCTGTTACGAGC
ACTGTCGAGCGGATATGTGGCCTTGATCCGGCAGATCCCTCTGTTGCTACAGCTGTTGTTCTGGTATTTCGTTGCTTTCT
TAAGCCTTTCTGGGACCCCCTTGGCGCCATTAGGAGCCTTGATACGTGTCTCGAACCAAGGGATCGAATTGCTTGGCCTA
AATCTGAGCGTTGAATTTTCGGCTTTATTAGTGGGCCTAAGCATCTTCACAGCAGCATCGATTGCTGAAATTGTCCGCGG
TGGATTGAATTCTGTTCCGAGTGGTCAATGGGAAGCGTTTCGCAGTCTTGGTTTGCCAGAAGGTTTTGGGTTACGTCGGG
TGGTGTTACCTCAAGCTTTACCAGCCATCCTGCCTGGCCTAACAAGCCAATATCTCAACTTGGCCAAAAACAGCACATTG
GCAATCGCCGTAGGTTATGCCGATGTCTATGCGGTAAGTGATACGACAATCACACAGACCGGCAGAGCGATTGAAGGATT
CTTACTGTTGTTGATCAGTTTTTTGCTGCTTAACCTTCTGATCACTGGAGGGATGGAAGTTCTCAATCGAGTTGTGATCA
GATCCCAGCAATAG

Upstream 100 bases:

>100_bases
CCACCTCGGTCCAAACAGTTCTGTGCCAATTCCTAGAGGTCTAAATCGCTCCTATCGGCAAGGTGGCTTACTGATCGCGC
CACCATTTAACTAACCTCCC

Downstream 100 bases:

>100_bases
CCTTAAGCTCAATAAGGTTTTTGTTTTTCATGAACTCTTTACTTCAACGGCGCATCGCAGCAGTGCTCTTGTTTATTGCA
GCTGCCATTGCCATCCTTTT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLVLATVIGVLAGAARSSSNLLLRALSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
NLSVEFSALLVGLSIFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPEGFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFLLLLISFLLLNLLITGGMEVLNRVVIRSQQ

Sequences:

>Translated_297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLVLATVIGVLAGAARSSSNLLLRALSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
NLSVEFSALLVGLSIFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPEGFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFLLLLISFLLLNLLITGGMEVLNRVVIRSQQ
>Mature_297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLVLATVIGVLAGAARSSSNLLLRALSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
NLSVEFSALLVGLSIFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPEGFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFLLLLISFLLLNLLITGGMEVLNRVVIRSQQ

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=133, Percent_Identity=48.8721804511278, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1786874, Length=229, Percent_Identity=30.5676855895196, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786873, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082239, Length=187, Percent_Identity=31.0160427807487, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787087, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31743; Mature: 31743

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCC
PSDSYAWALCMGWLNSLKVILCGLVLATVIGVLAGAARSSSNLLLRALSSGYVALIRQIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGLNLSVEFSALLVGLSIFTAAS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
IAEIVRGGLNSVPSGQWEAFRSLGLPEGFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AIAVGYADVYAVSDTTITQTGRAIEGFLLLLISFLLLNLLITGGMEVLNRVVIRSQQ
EEEEECHHEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCC
PSDSYAWALCMGWLNSLKVILCGLVLATVIGVLAGAARSSSNLLLRALSSGYVALIRQIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGLNLSVEFSALLVGLSIFTAAS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
IAEIVRGGLNSVPSGQWEAFRSLGLPEGFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AIAVGYADVYAVSDTTITQTGRAIEGFLLLLISFLLLNLLITGGMEVLNRVVIRSQQ
EEEEECHHEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]