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The map label for this gene is yrvN [H]

Identifier: 124021978

GI number: 124021978

Start: 276053

End: 278260

Strand: Reverse

Name: yrvN [H]

Synonym: P9303_02651

Alternate gene names: 124021978

Gene position: 278260-276053 (Counterclockwise)

Preceding gene: 124021982

Following gene: 124021974

Centisome position: 10.37

GC content: 56.61

Gene sequence:

>2208_bases
TTGGATCAAGATCTGTTCACATACCAGGGAGATCAGGAGCTAAAGCGCCATGCACCACTAGCTGATCGCCTGCGCCCTAG
AACCCTAGAGGAATTTGTTGGCCAGGGTTCGATCCTGGCGGAAGGACGTCTCCTACGCCGAGCCATTGCTGCCGATCGTG
TAGGCAACTTGCTGCTACATGGTCCTCCAGGTGTTGGTAAAACCACCCTGGCCAGGATTATCGCTGGCCACACCCGTGCC
AACTTCAGCAGCCTCAATGCTGTTCTGGCAGGGGTTAAAGAACTTCGCCAAGAAGTAGATGCAGCCAAGCAGCGGCTAGA
GCGACATGGCTTACGCACCATTTTGTTCATCGACGAAGTACACCGCTTTAACAGTGCCCAACAAGATGCCCTGCTGCCCT
GGGTAGAGAACGGCACCGTGACACTGATCGGTGCCACCACGGAAAACCCCTATTTCGAAGTCAACAAAGCGCTGGTAAGC
CGCTCCAGGCTGTTCCGACTACAGGCCCTCGAGAATGAAGATCTTCATCGCCTCCTGAAACACGCTCTTCAAGATTGCGA
GCGGGGCTATGGCGATCGTCAGGTGATGCTCAGCACAGCAGCTGCAAACCATCTCGTCAATGTCGCCAACGGCGATGCTC
GCAGTCTGCTCAATGCTCTCGAACTCGCTGTGGAGAGCAGCCGCCCCAATGAACAGGGCTCAATCCATATCAACCTTGCC
ATCGCTGAAGAATCAATTCAGGAGCGGGCAGTTCTCTACGACAAGCATGGGGATGCCCATTTCGACACCATTAGTGCCTT
CATCAAATCCCTACGAGGCTCAGATGCCGATGCAGCTCTGTTCTGGCTAGCGCGCATGGTGGAGGCTGGTGAAAACCCAC
GCTTCATCTTCAGACGCATGCTCATTGCCGCTGGAGAGGACATTGGCCTCGCTGATCCCCAGGCGATCGTGGTTGTAGAA
GCCTGTGCTGCAGCCTTCGAGCGAATCGGCCTACCGGAGGGTCTCTACCCCCTGGCACAAGCCACCCTTTACTTGGCCTG
CGCCGAAAAAAGCAACAGTGTACTGGGTTTCTTCGAAGCCCTACGCACGGTGCGGGAGGCCCAGCATCAAGACGTCCCCA
GCCATCTCCGCGATTCCCATCGTGACGGAGCAGCATTTGGAGATGGTGTCGGCTACCGCTACCCCCATGCTTTTGCGGAA
CACTGGGTTTCACAGCAATACCTACCCACCTCCCTGCAAGGAGAAGTCTTCTGGCAACCGAGCCAAAAAGGCTGGGAAGG
GCACCGGCGCCTGCTCATGCTGGAACGAAGGGCAGCACAGCTCGCCGCAGCAAGCGAATCAGCCCAGGAGAACCCATTGC
TCGTTAGCAGTGGTCCAGAAACCCCTGAACTAGAGAGATGGGTGCAACGCCAGCTCAGCCAAGATGGAGAACGCCTCAAC
CACCTGCGCGAACGCCTCTGGTCTGGAGTGACTTACCAACGCCACCATCGAGTTCTGATGATCGGCGGACGCTCCTTGCT
CTGGGCACTCGATCCGCTTCAAGCAGTGCCTGAAGGCGGCGTCACAATCCTCTGCGCAACAGCGCAGGATCAGGCGCGCC
TAATAGCTCAGCTCGATCTGCTCGATCCCATCATCCGCCCTGAACTGATCGATGGAAGCAGCGATGCCCTCCAAGACTTA
CCAGCACAACATCAGTTCGAATGGATTGGGGGACGTCTCTCCAGCCAAGACATTGCAGGTACAGAACAGAAGAAACTTTG
GAGCCTGATCAGCCAGCGATGCACCGATAAAACCGGTCTAAGGCTCCTGATCAGCCATGCAGACATCGGGCCGGCCGAGG
CCCTACTGCAATTACTAGAGAGCAAAGGAGCCAATCCCGCGGAGAGAAACTTGCTAGCACCACTCATCGCTCGCGAAAAG
ATCTGGCTTGAAAGCCAGCGCCTCGATTCCCTCCTTGCACAAAACCTGAAGGAGTGCGGCTGGCAGCTGACCTGGGAGAG
ATGGGAGGAACTCCTAACGTTGCAGGTGGATGAAGGCCTTGAGCATCGCTGGCTCAGCGAAGGGCGACCCTACCGAGACC
TAGTAGCGACCAATGCATCGTTAGAGGTTCTGGAAAACCTGAAGCTCATGCTCAAGCGCACGCGAGGACAACAACTACCC
CAACGCCTGATCCATCAACGCATCATCGGCAGCCGCAGACTCCACTAA

Upstream 100 bases:

>100_bases
GCACTAACGACTTGTTCAACAGCCTGATTATGGAAAGTTTCCAGCTCACGACAACAAGTCACCCCCTAGCGCAAGAATTG
TCCACCAGTGCCAGAGCTCA

Downstream 100 bases:

>100_bases
CACTGCCAAGCCATCGGGAAGACCAACAGCAATAAAAAAAGCCCCGGCGATGCCGGGGCTTGAGAGTTGTGATCAAAAAC
GGATCACCAAAGGCCACGAA

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MDQDLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENEDLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQKGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLSQDGERLN
HLRERLWSGVTYQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGSSDALQDL
PAQHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTDKTGLRLLISHADIGPAEALLQLLESKGANPAERNLLAPLIAREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLMLKRTRGQQLP
QRLIHQRIIGSRRLH

Sequences:

>Translated_735_residues
MDQDLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENEDLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQKGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLSQDGERLN
HLRERLWSGVTYQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGSSDALQDL
PAQHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTDKTGLRLLISHADIGPAEALLQLLESKGANPAERNLLAPLIAREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLMLKRTRGQQLP
QRLIHQRIIGSRRLH
>Mature_735_residues
MDQDLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENEDLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQKGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLSQDGERLN
HLRERLWSGVTYQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGSSDALQDL
PAQHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTDKTGLRLLISHADIGPAEALLQLLESKGANPAERNLLAPLIAREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLMLKRTRGQQLP
QRLIHQRIIGSRRLH

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=38.3561643835616, Blast_Score=275, Evalue=1e-73,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=34.2465753424658, Blast_Score=223, Evalue=5e-58,
Organism=Escherichia coli, GI1787119, Length=412, Percent_Identity=43.6893203883495, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI1788167, Length=121, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=421, Percent_Identity=36.5795724465558, Blast_Score=253, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6324039, Length=283, Percent_Identity=27.208480565371, Blast_Score=81, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 82404; Mature: 82404

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQDLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLH
CCCCCCCCCCHHHHHHCCCHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEV
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
HRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENEDLHRLLK
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
HHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRM
EEHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPQAIVVVEACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHH
LRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAEHWVSQQYLPTSLQGEVFWQP
HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECC
SQKGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLSQDGERLN
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
HLRERLWSGVTYQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDL
HHHHHHHCCCCCHHCCEEEEECCCHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHH
LDPIIRPELIDGSSDALQDLPAQHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTDKTGL
HHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
RLLISHADIGPAEALLQLLESKGANPAERNLLAPLIAREKIWLESQRLDSLLAQNLKECG
EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLMLKRTRGQQLP
CEECHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRLIHQRIIGSRRLH
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MDQDLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLH
CCCCCCCCCCHHHHHHCCCHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEV
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
HRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENEDLHRLLK
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
HHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRM
EEHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPQAIVVVEACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHH
LRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAEHWVSQQYLPTSLQGEVFWQP
HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECC
SQKGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLSQDGERLN
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
HLRERLWSGVTYQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDL
HHHHHHHCCCCCHHCCEEEEECCCHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHH
LDPIIRPELIDGSSDALQDLPAQHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTDKTGL
HHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
RLLISHADIGPAEALLQLLESKGANPAERNLLAPLIAREKIWLESQRLDSLLAQNLKECG
EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLMLKRTRGQQLP
CEECHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRLIHQRIIGSRRLH
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]