Click here to switch to the map view.

The map label for this gene is spsF [H]

Identifier: 123968959

GI number: 123968959

Start: 1199015

End: 1199737

Strand: Reverse

Name: spsF [H]

Synonym: A9601_14261

Alternate gene names: 123968959

Gene position: 1199737-1199015 (Counterclockwise)

Preceding gene: 123968966

Following gene: 123968958

Centisome position: 71.85

GC content: 25.73

Gene sequence:

>723_bases
ATGTTAAATAATATTTTGTCTAGTGAAATCAAAAATTCAGTTGTTATAGGCATTCAAGCAAGAATTTCGTCTCAAAGGCT
ACCTAGAAAAGCATTAATGCCAATAAAAGAAACTACAATTCTTGGAGCAACAATTAGTAGATGTTTAGCATCTGATCTGA
GAACATATGTTCTTACTTCTAATCAAGTTGAAGATGACTTAATCGAAAATGAAAGTAAAAAATATAAGGTTAGTGGAGTT
TTAAGAGGATCATTAGCTAATGTTTTGTCAAGATATAAGAATCTAGAAAAACAAACTAAAGCGAAATATATCATAAGAGT
AACCGCTGACAATCCATTCACTGATACGTTAGGTATCATAAATCTTGCAAATCAAACTTTAAACAATAATTACCTTTATT
TACGAAACTTAGAAGAAGATTTGCCTATTGGATATCATTCAGAACTGTTTAATTCTAAAGAACTATACAAACCATATAAC
AATAATGATTTAGCTAAAGAACATGTAACTTACTCTATAAAAAAGAATGTCAAAATTTCGTATGCGCAATCTTTAAATTA
TGGATTTAATAAAATTAATTTGAAAGCATTAGAATGTAGTATTGATACTAAGAACGATTATTTGAAAGCTATTAACTTGA
TAAAAAATATTAATTCAAATCAATGTTTTGAAAGTCTTAATTTGACAAAAAAAATTTTTTTAAATATTAAAAATCAAAAA
TGA

Upstream 100 bases:

>100_bases
ATTATTTAAGAACAAAATGGAATTTTTTTAAATTTTAATTTAAGTATTTAGGAATATGATCTTATATTCTTTATATAATT
AAATTGTTGATTATTTTTTA

Downstream 100 bases:

>100_bases
TTATTTGTTTCTTATTATAAATTGGCAATACTTAATAAATGTTACTATTAACTTTATTAGTTTAAATTCATAGGATGAAT
AATCCAATTGTTTCTGTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLNNILSSEIKNSVVIGIQARISSQRLPRKALMPIKETTILGATISRCLASDLRTYVLTSNQVEDDLIENESKKYKVSGV
LRGSLANVLSRYKNLEKQTKAKYIIRVTADNPFTDTLGIINLANQTLNNNYLYLRNLEEDLPIGYHSELFNSKELYKPYN
NNDLAKEHVTYSIKKNVKISYAQSLNYGFNKINLKALECSIDTKNDYLKAINLIKNINSNQCFESLNLTKKIFLNIKNQK

Sequences:

>Translated_240_residues
MLNNILSSEIKNSVVIGIQARISSQRLPRKALMPIKETTILGATISRCLASDLRTYVLTSNQVEDDLIENESKKYKVSGV
LRGSLANVLSRYKNLEKQTKAKYIIRVTADNPFTDTLGIINLANQTLNNNYLYLRNLEEDLPIGYHSELFNSKELYKPYN
NNDLAKEHVTYSIKKNVKISYAQSLNYGFNKINLKALECSIDTKNDYLKAINLIKNINSNQCFESLNLTKKIFLNIKNQK
>Mature_240_residues
MLNNILSSEIKNSVVIGIQARISSQRLPRKALMPIKETTILGATISRCLASDLRTYVLTSNQVEDDLIENESKKYKVSGV
LRGSLANVLSRYKNLEKQTKAKYIIRVTADNPFTDTLGIINLANQTLNNNYLYLRNLEEDLPIGYHSELFNSKELYKPYN
NNDLAKEHVTYSIKKNVKISYAQSLNYGFNKINLKALECSIDTKNDYLKAINLIKNINSNQCFESLNLTKKIFLNIKNQK

Specific function: Unknown

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CMP-NeuNAc synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: NA

Molecular weight: Translated: 27390; Mature: 27390

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNILSSEIKNSVVIGIQARISSQRLPRKALMPIKETTILGATISRCLASDLRTYVLTS
CCCHHHHHHHCCEEEEEEEEECCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEC
NQVEDDLIENESKKYKVSGVLRGSLANVLSRYKNLEKQTKAKYIIRVTADNPFTDTLGII
CCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHH
NLANQTLNNNYLYLRNLEEDLPIGYHSELFNSKELYKPYNNNDLAKEHVTYSIKKNVKIS
HHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCHHHCCCCCCCCCHHHHEEEEEECCEEEE
YAQSLNYGFNKINLKALECSIDTKNDYLKAINLIKNINSNQCFESLNLTKKIFLNIKNQK
EEHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCC
>Mature Secondary Structure
MLNNILSSEIKNSVVIGIQARISSQRLPRKALMPIKETTILGATISRCLASDLRTYVLTS
CCCHHHHHHHCCEEEEEEEEECCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEC
NQVEDDLIENESKKYKVSGVLRGSLANVLSRYKNLEKQTKAKYIIRVTADNPFTDTLGII
CCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHH
NLANQTLNNNYLYLRNLEEDLPIGYHSELFNSKELYKPYNNNDLAKEHVTYSIKKNVKIS
HHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCHHHCCCCCCCCCHHHHEEEEEECCEEEE
YAQSLNYGFNKINLKALECSIDTKNDYLKAINLIKNINSNQCFESLNLTKKIFLNIKNQK
EEHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]