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The map label for this gene is 123968705

Identifier: 123968705

GI number: 123968705

Start: 987306

End: 987698

Strand: Direct

Name: 123968705

Synonym: A9601_11721

Alternate gene names: NA

Gene position: 987306-987698 (Clockwise)

Preceding gene: 123968704

Following gene: 123968707

Centisome position: 59.12

GC content: 36.9

Gene sequence:

>393_bases
ATGAGAGAAAGATTACTAGGATATTGGGCACTTTCATGGGTTGGGCTAATCAGCAATATTATTGCACTTCCAATAATCGC
AATAATAATAAGTTATGGACCTCCACTAAAAGTTGCAAATATAACTCTTGCCATAAGCCTTGGTTGGCCTGCTGCCATAG
TTGGAATAGTTTCTTCAGCAGCTCTTCTAGCAGAGAGAAAATGGGGAGTAACTTTAACTCTAGTATCTCTATCAATGGTA
ATTTCCGGGACGGGTCCTTATTCTGTGGTGAGACTTATAACTCTTAAAGACATTTTTGGAATTGGTGGGTTTACTCTTTT
GACAACTTTATTAAGTACATTAGCGCTTCTATATTGGTGTAATCCAAAACATCGAAGAAGTATTAGGTTATAA

Upstream 100 bases:

>100_bases
TCCAATAATGCAAATTAAATTAATTTTTTAGGAATATTAAGTAGCATTAAAAAAGCCTCTTTAATATTGTAAATTAATCT
AATAGTTAAAGCAGTTAATA

Downstream 100 bases:

>100_bases
AATTGAAAATCAAGAAAAAGTATTATTCTTACTAGTTGGATACTGAATTCTTCTATGCCTAATTCTTTTCCACACATTCA
AGAATGCCCCTTTTATTAGA

Product: fiber protein

Products: NA

Alternate protein names: Core Protein-Like Protein; Fiber Protein; Hepatitis C Virus Core Protein

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MRERLLGYWALSWVGLISNIIALPIIAIIISYGPPLKVANITLAISLGWPAAIVGIVSSAALLAERKWGVTLTLVSLSMV
ISGTGPYSVVRLITLKDIFGIGGFTLLTTLLSTLALLYWCNPKHRRSIRL

Sequences:

>Translated_130_residues
MRERLLGYWALSWVGLISNIIALPIIAIIISYGPPLKVANITLAISLGWPAAIVGIVSSAALLAERKWGVTLTLVSLSMV
ISGTGPYSVVRLITLKDIFGIGGFTLLTTLLSTLALLYWCNPKHRRSIRL
>Mature_130_residues
MRERLLGYWALSWVGLISNIIALPIIAIIISYGPPLKVANITLAISLGWPAAIVGIVSSAALLAERKWGVTLTLVSLSMV
ISGTGPYSVVRLITLKDIFGIGGFTLLTTLLSTLALLYWCNPKHRRSIRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14086; Mature: 14086

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERLLGYWALSWVGLISNIIALPIIAIIISYGPPLKVANITLAISLGWPAAIVGIVSSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
ALLAERKWGVTLTLVSLSMVISGTGPYSVVRLITLKDIFGIGGFTLLTTLLSTLALLYWC
HHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NPKHRRSIRL
CCCCCCCCCC
>Mature Secondary Structure
MRERLLGYWALSWVGLISNIIALPIIAIIISYGPPLKVANITLAISLGWPAAIVGIVSSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
ALLAERKWGVTLTLVSLSMVISGTGPYSVVRLITLKDIFGIGGFTLLTTLLSTLALLYWC
HHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NPKHRRSIRL
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA