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The map label for this gene is dapF [H]

Identifier: 123968506

GI number: 123968506

Start: 842035

End: 842895

Strand: Direct

Name: dapF [H]

Synonym: A9601_09731

Alternate gene names: 123968506

Gene position: 842035-842895 (Clockwise)

Preceding gene: 123968504

Following gene: 123968507

Centisome position: 50.42

GC content: 28.92

Gene sequence:

>861_bases
ATGAAAAATATAAGTTTTGAAAAATATCAAGGTAACGGAAATGATTTCGTAATAATAGATTCTAGAGGAAATGAATTATA
TAAAAATTACAAGACAAATAAAATATTTGATATAAAAAAAATTTGCAACAGGCAATTTGGTGTTGGAGCAGATGGTGTGA
TTTTTATAGAAGAACCTAATGAAGATAATTATGCAAAAATGATAATTTTTAATTCTGATGGTTCTGAAGCACAAATGTGT
GGAAACGGAATTAGGTGTTTAGTTGAGTATCTCCACGTAAATGATTCAATGAATAATGAAAATATAGAATATAAAATTGA
GACTAAAGCAGGTTTAAAAATTGCAAAATATATAAATGATGAAATTACAGTTAAAATGGGAGTCCCTATTTTAGAAGGTC
AAAATATTCCAACAACAATTGAAAAAAAAATAAATTCAATTCCTTCACACGAATTTATTGAGAAAGATTTTAGTAATATG
GGTTATGCCGTAGGAATGGGAAATCCTCATTTAATATTCTTTGTAAAAGACATAGAGTCAATTGTTCTTTCCAGACTTGG
TCCTATATTTGAAAAAAATGAATTATTTCCTGAAAAAACTAATGTACATTTTTGTCAAATTTTAAATAGAGATAATATAA
AAGTAAAAGTATGGGAAAGAGGTGCAGGACCAACCTTAGCTTGTGGAACAGGTGCCTGTGCTATCCATGTGGCAGCTTAT
AAATTAGGCCTTTGTAATTCACAAACCATAGTAACCTTACCAGGAGGTAATCTTAAAATTGATTGGTCAGAAGACGATTG
TGAAGTAATGATGACCGGTAATGCTAAAAAGGTTTTCTCAGGATCAATTTTAGTAAATTAA

Upstream 100 bases:

>100_bases
TTTTATTTGTTAAATTATTATTTTAATATCCATTGTATAAAATAAATAGATTGTTAAAAGGAATAATTTATAATTAAAAT
TTAAGATATATGAATTACAA

Downstream 100 bases:

>100_bases
TGGAAAATAATTTTATCTATTTAGATAATGCATCCACAACTCCATTATCTGAGAATGTTTTAAAGATAATTAATTCAACT
TATAGGAATTATTGGCATAA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKNISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDNYAKMIIFNSDGSEAQMC
GNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYINDEITVKMGVPILEGQNIPTTIEKKINSIPSHEFIEKDFSNM
GYAVGMGNPHLIFFVKDIESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVAAY
KLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN

Sequences:

>Translated_286_residues
MKNISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDNYAKMIIFNSDGSEAQMC
GNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYINDEITVKMGVPILEGQNIPTTIEKKINSIPSHEFIEKDFSNM
GYAVGMGNPHLIFFVKDIESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVAAY
KLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN
>Mature_286_residues
MKNISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDNYAKMIIFNSDGSEAQMC
GNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYINDEITVKMGVPILEGQNIPTTIEKKINSIPSHEFIEKDFSNM
GYAVGMGNPHLIFFVKDIESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVAAY
KLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=282, Percent_Identity=32.9787234042553, Blast_Score=172, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 31940; Mature: 31940

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPN
CCCCCCEEEECCCCEEEEEECCCCHHHHCCCCCEEEEHHHHHCCCCCCCCCCEEEEECCC
EDNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND
CCCEEEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCC
EITVKMGVPILEGQNIPTTIEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVKDIES
EEEEEECCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEEHHHHH
IVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVAAY
HHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCEEEEEEEE
KLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN
EEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCEEEECEEEEC
>Mature Secondary Structure
MKNISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPN
CCCCCCEEEECCCCEEEEEECCCCHHHHCCCCCEEEEHHHHHCCCCCCCCCCEEEEECCC
EDNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND
CCCEEEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCC
EITVKMGVPILEGQNIPTTIEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVKDIES
EEEEEECCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEEHHHHH
IVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVAAY
HHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCEEEEEEEE
KLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN
EEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCEEEECEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA