| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is glyS [H]
Identifier: 123968354
GI number: 123968354
Start: 708542
End: 710704
Strand: Direct
Name: glyS [H]
Synonym: A9601_08211
Alternate gene names: 123968354
Gene position: 708542-710704 (Clockwise)
Preceding gene: 123968352
Following gene: 123968356
Centisome position: 42.43
GC content: 29.5
Gene sequence:
>2163_bases TTGTCTAAATATTTACTTGAGATAGGAACAGAAGAGTTGCCCGCAAATTTTTCTCATGCTGTTCTAGAGCAATTTAAATC TCTAATAGAATTTGAATTGGATAAAAAGTTAATCAAATTCGAACATATAGTTGTTACCTCAACACCAAGGAGAATAGTTC TACTTCTCGAAGGTTTAGTTGATTATGCAGAAGATAAGATAATAGAAAGAAAAGGGCCTAAAGCAAATTCAGCTTATTTA AATGGATGTCCTACTAATGCTGCTTTAGGATTTGCTAATAGCTTAGGTATAGATGTTGGTGAGCTAGAAATAAAAAAGAC AGAAAAGGGTGATTTTGTATTTGGAAAGAAAATTGAGAAAGGACTATCAACAAAAATTTCTTTGTCTTCGATTATCCCAA AATTAGTAAAGAGTCTTCAAGGCCCTCGATTTATGAAGTGGGGGGCCGGGAACATGAAATTTTCAAGACCTATTAGGTGG ATTGCCTCAATTTATAATGATGAAATTCTTGATTTTGAATTTGATGAATGTGATCCAAAGATTAAAATAAATAATAAAAC AAAAAGTCATAGGCTAATCAATGAAGTTTTAGAACTTCAGAATCCGGATGATTTTTTTGAATTATTGAAACGAAATAGAG TAATAGCTATTCGAAAAGAAAGAAAAGAAAAAATTGAAAGTTTAATAAATCAGGCATCTAAATCTTTAAATTTGAAACCT GACCTTTCAGAAGGGTTATTAAATGAACTAACTGATTTGGTTGAATGGCCAGACTTAATTATTGGCAAATTTAGTGATGA ATTTCTTGAGCTTCCGGTTGAAGTTCTTTCAACAGTCATGAAAAGTCATCAGAGATACGTTCCTCTTTTATTGAAAAACA AAAGTTTTTCTAAACTAGATTTAAGCTCTGAAAAAAATATTAGTACAACTTTCTGTGTTATTTCAAATGGTCTTGAAGAA TCAAATAATAATATTGCCAAAGGGAATGAGAAAGTTTTAAAGGCAAGGTTTTCAGATGCAAAGTTTTTCGTAGAAAGTGA CAAAAAAGTTGCTTCAATCAAAAGAAATGAAAAGCTTAAATCTGTTTCATATTTGAAAGGACTTGGAAATATATTTCAGA GGGTAGAGAGGATAGAGGAAGTTACTAAAAAAATTCTTAAATTTTTAAATGATAAGTCTTTAGAAGAAAAAAAGATAATA GAAGCTGCTAAATACTGTAAAAACGACTTATGTAGTGAAATTGTTTTCGAATTCCCTGAGCTGCAAGGAATAATGGGTGG TAAATATCTTAAATATGAGGGATTTAGTGAGGATGTTTGCCTGGCTGTCGCGGAACATTATTTACCTTCTTTTTATAAGG ATGCTTTGCCCTCCACAAAATATGGTGCAATAGTTTCTATAGCAGATAAGGTCGAAACTTTAATTAGTATTTTTATTTCT GGTAAGCGCCCAAGTGGATCATCTGATCCCTATGCTTTAAGAAGAAATTTGAATGGAGTGATTAAAATAATTTGGGATTA TGAACTTGATTTGCCTTTAGATAAATTATTCAACGAACTTATTGATTTTTGGAAAATCGTATTTCCGAATTTAAACTTCT CAAGAGTAACAGTATTTAATGATTTAAATGAATTTTTAGTTCAAAGAATTGTTAGTCATCTAGAAGAAATATCACTAAGT AAAGAATTAATAAAGGCCGTTTGCTCTTCTGATGAATTATCTCAAAAAAGAGTATTGAATATTGTTGATCTTAAAAATAG GGTTAATTCTATTATCAAATTTAATAAAAAAGATAATTTTGTTGAAATACAGAAGGTAATTACTAGGGTAAGCAAATTAG CAAATAAAAGTGATATTTCCAGAGACGTTCTCTCAACAAGAGATTATGTAAATACAAAACTTTTTGAAAAAGATTGTGAA TTCAAAGTTTTTGAATTTATTGGCGAATTAGAAAAACTTTTTTCAGAAGGTTATTCCAATTATTTGGAACTTCTAAATTT GTTTGAGATTAATGTAAACACTATCGAGGATTTATTTGATAACGAAAAGGGAGTCCTAATAATGTCAGAGGATTTAAAAA TAAGAAATAATAGACTCAATTTGTTGAGCTTAATTAGAAACTATTCTTTAAAAATTGCCGACTTTACACTTTTGAACTCT TAA
Upstream 100 bases:
>100_bases CAACCTTGATCAAAGGACCAAAACATATCTCTTTTTATACATTAGCGAAAAGCTTATTTAACTGGTAGTAAATTATAGTA AGTGAAGTCATATTTTTTTC
Downstream 100 bases:
>100_bases CTTTAATCCCTCCCTTTATTGAATAATTTTCTAGCATTTTTTCTACCTCTTTATTTTCCCTAACAGCACTATCAACAGGT TTATATTTTAGAGGCGCTAG
Product: glycyl-tRNA synthetase beta subunit
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 720; Mature: 719
Protein sequence:
>720_residues MSKYLLEIGTEELPANFSHAVLEQFKSLIEFELDKKLIKFEHIVVTSTPRRIVLLLEGLVDYAEDKIIERKGPKANSAYL NGCPTNAALGFANSLGIDVGELEIKKTEKGDFVFGKKIEKGLSTKISLSSIIPKLVKSLQGPRFMKWGAGNMKFSRPIRW IASIYNDEILDFEFDECDPKIKINNKTKSHRLINEVLELQNPDDFFELLKRNRVIAIRKERKEKIESLINQASKSLNLKP DLSEGLLNELTDLVEWPDLIIGKFSDEFLELPVEVLSTVMKSHQRYVPLLLKNKSFSKLDLSSEKNISTTFCVISNGLEE SNNNIAKGNEKVLKARFSDAKFFVESDKKVASIKRNEKLKSVSYLKGLGNIFQRVERIEEVTKKILKFLNDKSLEEKKII EAAKYCKNDLCSEIVFEFPELQGIMGGKYLKYEGFSEDVCLAVAEHYLPSFYKDALPSTKYGAIVSIADKVETLISIFIS GKRPSGSSDPYALRRNLNGVIKIIWDYELDLPLDKLFNELIDFWKIVFPNLNFSRVTVFNDLNEFLVQRIVSHLEEISLS KELIKAVCSSDELSQKRVLNIVDLKNRVNSIIKFNKKDNFVEIQKVITRVSKLANKSDISRDVLSTRDYVNTKLFEKDCE FKVFEFIGELEKLFSEGYSNYLELLNLFEINVNTIEDLFDNEKGVLIMSEDLKIRNNRLNLLSLIRNYSLKIADFTLLNS
Sequences:
>Translated_720_residues MSKYLLEIGTEELPANFSHAVLEQFKSLIEFELDKKLIKFEHIVVTSTPRRIVLLLEGLVDYAEDKIIERKGPKANSAYL NGCPTNAALGFANSLGIDVGELEIKKTEKGDFVFGKKIEKGLSTKISLSSIIPKLVKSLQGPRFMKWGAGNMKFSRPIRW IASIYNDEILDFEFDECDPKIKINNKTKSHRLINEVLELQNPDDFFELLKRNRVIAIRKERKEKIESLINQASKSLNLKP DLSEGLLNELTDLVEWPDLIIGKFSDEFLELPVEVLSTVMKSHQRYVPLLLKNKSFSKLDLSSEKNISTTFCVISNGLEE SNNNIAKGNEKVLKARFSDAKFFVESDKKVASIKRNEKLKSVSYLKGLGNIFQRVERIEEVTKKILKFLNDKSLEEKKII EAAKYCKNDLCSEIVFEFPELQGIMGGKYLKYEGFSEDVCLAVAEHYLPSFYKDALPSTKYGAIVSIADKVETLISIFIS GKRPSGSSDPYALRRNLNGVIKIIWDYELDLPLDKLFNELIDFWKIVFPNLNFSRVTVFNDLNEFLVQRIVSHLEEISLS KELIKAVCSSDELSQKRVLNIVDLKNRVNSIIKFNKKDNFVEIQKVITRVSKLANKSDISRDVLSTRDYVNTKLFEKDCE FKVFEFIGELEKLFSEGYSNYLELLNLFEINVNTIEDLFDNEKGVLIMSEDLKIRNNRLNLLSLIRNYSLKIADFTLLNS >Mature_719_residues SKYLLEIGTEELPANFSHAVLEQFKSLIEFELDKKLIKFEHIVVTSTPRRIVLLLEGLVDYAEDKIIERKGPKANSAYLN GCPTNAALGFANSLGIDVGELEIKKTEKGDFVFGKKIEKGLSTKISLSSIIPKLVKSLQGPRFMKWGAGNMKFSRPIRWI ASIYNDEILDFEFDECDPKIKINNKTKSHRLINEVLELQNPDDFFELLKRNRVIAIRKERKEKIESLINQASKSLNLKPD LSEGLLNELTDLVEWPDLIIGKFSDEFLELPVEVLSTVMKSHQRYVPLLLKNKSFSKLDLSSEKNISTTFCVISNGLEES NNNIAKGNEKVLKARFSDAKFFVESDKKVASIKRNEKLKSVSYLKGLGNIFQRVERIEEVTKKILKFLNDKSLEEKKIIE AAKYCKNDLCSEIVFEFPELQGIMGGKYLKYEGFSEDVCLAVAEHYLPSFYKDALPSTKYGAIVSIADKVETLISIFISG KRPSGSSDPYALRRNLNGVIKIIWDYELDLPLDKLFNELIDFWKIVFPNLNFSRVTVFNDLNEFLVQRIVSHLEEISLSK ELIKAVCSSDELSQKRVLNIVDLKNRVNSIIKFNKKDNFVEIQKVITRVSKLANKSDISRDVLSTRDYVNTKLFEKDCEF KVFEFIGELEKLFSEGYSNYLELLNLFEINVNTIEDLFDNEKGVLIMSEDLKIRNNRLNLLSLIRNYSLKIADFTLLNS
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=725, Percent_Identity=31.0344827586207, Blast_Score=331, Evalue=1e-91,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 82541; Mature: 82410
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYLLEIGTEELPANFSHAVLEQFKSLIEFELDKKLIKFEHIVVTSTPRRIVLLLEGLV CCCCHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH DYAEDKIIERKGPKANSAYLNGCPTNAALGFANSLGIDVGELEIKKTEKGDFVFGKKIEK HHHHHHHHHCCCCCCCCCEECCCCCHHHHCCHHHCCCCCCCEEEEECCCCCEEEHHHHHH GLSTKISLSSIIPKLVKSLQGPRFMKWGAGNMKFSRPIRWIASIYNDEILDFEFDECDPK CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC IKINNKTKSHRLINEVLELQNPDDFFELLKRNRVIAIRKERKEKIESLINQASKSLNLKP EEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC DLSEGLLNELTDLVEWPDLIIGKFSDEFLELPVEVLSTVMKSHQRYVPLLLKNKSFSKLD CHHHHHHHHHHHHHHCCHHHHHHCCHHHHHCHHHHHHHHHHCCCCCCCEEECCCCCCCCC LSSEKNISTTFCVISNGLEESNNNIAKGNEKVLKARFSDAKFFVESDKKVASIKRNEKLK CCCCCCCCEEEEEEECCHHHCCCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH SVSYLKGLGNIFQRVERIEEVTKKILKFLNDKSLEEKKIIEAAKYCKNDLCSEIVFEFPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH LQGIMGGKYLKYEGFSEDVCLAVAEHYLPSFYKDALPSTKYGAIVSIADKVETLISIFIS HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC GKRPSGSSDPYALRRNLNGVIKIIWDYELDLPLDKLFNELIDFWKIVFPNLNFSRVTVFN CCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHH DLNEFLVQRIVSHLEEISLSKELIKAVCSSDELSQKRVLNIVDLKNRVNSIIKFNKKDNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCH VEIQKVITRVSKLANKSDISRDVLSTRDYVNTKLFEKDCEFKVFEFIGELEKLFSEGYSN HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YLELLNLFEINVNTIEDLFDNEKGVLIMSEDLKIRNNRLNLLSLIRNYSLKIADFTLLNS HHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCEECCCHHHHHHHHHHCCCEEEEEEEECC >Mature Secondary Structure SKYLLEIGTEELPANFSHAVLEQFKSLIEFELDKKLIKFEHIVVTSTPRRIVLLLEGLV CCCHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH DYAEDKIIERKGPKANSAYLNGCPTNAALGFANSLGIDVGELEIKKTEKGDFVFGKKIEK HHHHHHHHHCCCCCCCCCEECCCCCHHHHCCHHHCCCCCCCEEEEECCCCCEEEHHHHHH GLSTKISLSSIIPKLVKSLQGPRFMKWGAGNMKFSRPIRWIASIYNDEILDFEFDECDPK CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC IKINNKTKSHRLINEVLELQNPDDFFELLKRNRVIAIRKERKEKIESLINQASKSLNLKP EEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC DLSEGLLNELTDLVEWPDLIIGKFSDEFLELPVEVLSTVMKSHQRYVPLLLKNKSFSKLD CHHHHHHHHHHHHHHCCHHHHHHCCHHHHHCHHHHHHHHHHCCCCCCCEEECCCCCCCCC LSSEKNISTTFCVISNGLEESNNNIAKGNEKVLKARFSDAKFFVESDKKVASIKRNEKLK CCCCCCCCEEEEEEECCHHHCCCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH SVSYLKGLGNIFQRVERIEEVTKKILKFLNDKSLEEKKIIEAAKYCKNDLCSEIVFEFPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH LQGIMGGKYLKYEGFSEDVCLAVAEHYLPSFYKDALPSTKYGAIVSIADKVETLISIFIS HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC GKRPSGSSDPYALRRNLNGVIKIIWDYELDLPLDKLFNELIDFWKIVFPNLNFSRVTVFN CCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHH DLNEFLVQRIVSHLEEISLSKELIKAVCSSDELSQKRVLNIVDLKNRVNSIIKFNKKDNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCH VEIQKVITRVSKLANKSDISRDVLSTRDYVNTKLFEKDCEFKVFEFIGELEKLFSEGYSN HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YLELLNLFEINVNTIEDLFDNEKGVLIMSEDLKIRNNRLNLLSLIRNYSLKIADFTLLNS HHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCEECCCHHHHHHHHHHCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA