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The map label for this gene is sms [H]

Identifier: 123967687

GI number: 123967687

Start: 140451

End: 141803

Strand: Reverse

Name: sms [H]

Synonym: A9601_01501

Alternate gene names: 123967687

Gene position: 141803-140451 (Counterclockwise)

Preceding gene: 123967693

Following gene: 123967685

Centisome position: 8.49

GC content: 31.41

Gene sequence:

>1353_bases
ATGTCTAGCAAATTATCTACTTTTATTTGTCAGAATTGCGGATCTGAAACTTCACAATATTTTGGTAGATGCTTAAATTG
CAACTCATGGAATTCCATTGTTGAAGAAATAAAAAGTAAGAGGTCTAAATATCAAGAAATAAAAAATAGTAAACAATCTA
TACCATTTAACGAGATTTCATCAAAAAAAATATCAAGATTTACAAGTGGTTTTAGGGAATTTGATCGAGTGCTTGGAGGT
GGAATCGTACCTGGATCTGTTGTTTTACTTGGAGGAGAACCAGGCATAGGTAAAAGCACAATAGTTCTTCAATCAGCAGG
AAAAATATCTCTCAATGAGAAAGTTTTATATGTAACTGCAGAAGAATCTTTAGAACAAGTAAAAATTAGGTGGGAAAGAT
TAAATCAAAGTAGTATTGATTTAAAAATTTTTGCAGAAACCAACTTATCCCTAATTATTGAAGAAATCAAACGGTTAAAT
CCAAGTTTCGCAATTATTGATAGTATTCAAGCCATCCATAATCATGAAATGGAAAGTTCGCCAGGATCGGTCTCTCAAGT
AAGAGCATGTTCATCTGAATTGCAAAATCTCGCCAAAGACAATAACATTGCCCTTTTAATCATTGGTCATGTCACCAAAG
ATGGTGCTTTAGCTGGCCCTAAAACTCTGGAGCACTTAGTTGATACAGTAATAAACTTTGAAGGAGATAATATTTCCTCA
CATAGATTATTAAGAAGTATAAAAAATCGATTTGGATCAACCTTTGAAATTGGAATTTTTGAAATGCTTGAACAGGGCTT
ACGAGAGATAAAAAATCCAAGTTCAATTTTTACAAATAAAGAAAATATTTCAGGTGTAACAACTACTATTACAAATGAAG
GTACTAGACCATTAGCAGTTGATATACAAGCACTTGTAAATAAAACTTTCTACAGTAACCCAAGACGAACTACAACTGGA
ATTAGCATAAATAGATTACATCAAATTCTAGCTGTTATTGAAAAACACGTAGGCATAAAATTATCTGAATTTGATTGTTA
TATAGCTACTGGCGGGGGTTTTGAGATTAATGATCCTTCATCTGACTTAGGTGTAGCAATATCAATTTTATCAAGTTTGA
AAAATATTCCTCCTTTAGTAAATAGCTCATTTATTGGGGAATTGGGATTGAGCGGTCAGGTTAGAAAATCTAATAACCTT
CGAACAAAGATAGAAGAAGCTATAAGACTAGGTATCAAAAATATCGTAGTACCAAAATTAGAGGAGGAAATAAATAATAA
TTTTCAAAATCTAATAAATATCAAAGAAATTTCCAATATTAAAGAAGCAGTTGACTATTCTTTATCAGAGTAA

Upstream 100 bases:

>100_bases
TATTAGCTAATCAGTAAGAGAATTAATTATTATCCTAATCTAACTTGTAGAGGGGCAATATCCCAAACATTCTAGTTCTA
ATACTTGATTAAAAAACTAA

Downstream 100 bases:

>100_bases
AAAAATTACAGGTATATATCTATTGAACTTCTTCCTGAGTTTTTCAACCAATTTTCAATATCTAGATACCCACCTGGATA
AAGTCTCACTGCTTTAGACC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSKYQEIKNSKQSIPFNEISSKKISRFTSGFREFDRVLGG
GIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTAEESLEQVKIRWERLNQSSIDLKIFAETNLSLIIEEIKRLN
PSFAIIDSIQAIHNHEMESSPGSVSQVRACSSELQNLAKDNNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
HRLLRSIKNRFGSTFEIGIFEMLEQGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTG
ISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLVNSSFIGELGLSGQVRKSNNL
RTKIEEAIRLGIKNIVVPKLEEEINNNFQNLINIKEISNIKEAVDYSLSE

Sequences:

>Translated_450_residues
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSKYQEIKNSKQSIPFNEISSKKISRFTSGFREFDRVLGG
GIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTAEESLEQVKIRWERLNQSSIDLKIFAETNLSLIIEEIKRLN
PSFAIIDSIQAIHNHEMESSPGSVSQVRACSSELQNLAKDNNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
HRLLRSIKNRFGSTFEIGIFEMLEQGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTG
ISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLVNSSFIGELGLSGQVRKSNNL
RTKIEEAIRLGIKNIVVPKLEEEINNNFQNLINIKEISNIKEAVDYSLSE
>Mature_449_residues
SSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSKYQEIKNSKQSIPFNEISSKKISRFTSGFREFDRVLGGG
IVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTAEESLEQVKIRWERLNQSSIDLKIFAETNLSLIIEEIKRLNP
SFAIIDSIQAIHNHEMESSPGSVSQVRACSSELQNLAKDNNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISSH
RLLRSIKNRFGSTFEIGIFEMLEQGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTGI
SINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLVNSSFIGELGLSGQVRKSNNLR
TKIEEAIRLGIKNIVVPKLEEEINNNFQNLINIKEISNIKEAVDYSLSE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=423, Percent_Identity=41.371158392435, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49642; Mature: 49511

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSKYQEIKNSKQSIPFNEIS
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
SKKISRFTSGFREFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEECCEEEEEEH
EESLEQVKIRWERLNQSSIDLKIFAETNLSLIIEEIKRLNPSFAIIDSIQAIHNHEMESS
HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
PGSVSQVRACSSELQNLAKDNNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHH
HRLLRSIKNRFGSTFEIGIFEMLEQGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAV
HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCCCCHHH
DIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPS
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEECCCEEECCCC
SDLGVAISILSSLKNIPPLVNSSFIGELGLSGQVRKSNNLRTKIEEAIRLGIKNIVVPKL
CHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHH
EEEINNNFQNLINIKEISNIKEAVDYSLSE
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSKYQEIKNSKQSIPFNEIS
CCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
SKKISRFTSGFREFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEECCEEEEEEH
EESLEQVKIRWERLNQSSIDLKIFAETNLSLIIEEIKRLNPSFAIIDSIQAIHNHEMESS
HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
PGSVSQVRACSSELQNLAKDNNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHH
HRLLRSIKNRFGSTFEIGIFEMLEQGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAV
HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCCCCHHH
DIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPS
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEECCCEEECCCC
SDLGVAISILSSLKNIPPLVNSSFIGELGLSGQVRKSNNLRTKIEEAIRLGIKNIVVPKL
CHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHH
EEEINNNFQNLINIKEISNIKEAVDYSLSE
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]