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The map label for this gene is clpS

Identifier: 123966912

GI number: 123966912

Start: 1476117

End: 1476434

Strand: Reverse

Name: clpS

Synonym: P9515_16791

Alternate gene names: 123966912

Gene position: 1476434-1476117 (Counterclockwise)

Preceding gene: 123966913

Following gene: 123966908

Centisome position: 86.64

GC content: 33.96

Gene sequence:

>318_bases
ATGTCAATTATAAAGCTAGAAAAAGGTGACAATAACAACGCAGCAGTCCTAGAAAAGAAAACAGCGGCGTTAAAAAATAA
ATCACCAAAATATAAGGTACTACTTCATAATGATCCAGTAAATTCAATGGAGTATATTACAATTGCGCTTAGAGAAGTTG
TACCACAATTAAGCGAGCAAGATGCTATCGCTATTATGCTTGAGGCTCATAATAATGGGGTTGGTTTAGTTATCGTTTGT
GACCTAGAACCAGCTGAATTTTATTCAGAATCACTTAAATCTAAAGGTATATCCAGTTCAATCGAAAAAGATGAATGA

Upstream 100 bases:

>100_bases
TATCTGCCTTTAACTCAAGATTAAATGTCTCTAATGCAATGGAGCGAATAATTAATATATAATAATTAATAAATTTCCTA
GTAATTAAAAATTAAAAGTA

Downstream 100 bases:

>100_bases
TTGTATTATTAAAAATTAATTAAGCTTAAACCCTCTTATAATTTTGCAGAGCTTAACTTCCTTTCTGAAAATTTTCGAAC
TTTTAGAGAATCATCTAAAG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MSIIKLEKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVC
DLEPAEFYSESLKSKGISSSIEKDE

Sequences:

>Translated_105_residues
MSIIKLEKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVC
DLEPAEFYSESLKSKGISSSIEKDE
>Mature_104_residues
SIIKLEKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVCD
LEPAEFYSESLKSKGISSSIEKDE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_PROM5 (A2BYM5)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001011993.1
- ProteinModelPortal:   A2BYM5
- SMR:   A2BYM5
- STRING:   A2BYM5
- GeneID:   4720188
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_16791
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   TCALEHA
- ProtClustDB:   PRK00033
- BioCyc:   PMAR167542:P9515ORF_1751-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11542; Mature: 11411

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIKLEKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQ
CCEEEEECCCCCCEEEEEHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
DAIAIMLEAHNNGVGLVIVCDLEPAEFYSESLKSKGISSSIEKDE
CEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIIKLEKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQ
CEEEEECCCCCCEEEEEHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
DAIAIMLEAHNNGVGLVIVCDLEPAEFYSESLKSKGISSSIEKDE
CEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA