| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998836
Identifier: 121998836
GI number: 121998836
Start: 2260015
End: 2260398
Strand: Reverse
Name: 121998836
Synonym: Hhal_2057
Alternate gene names: NA
Gene position: 2260398-2260015 (Counterclockwise)
Preceding gene: 121998837
Following gene: 121998835
Centisome position: 84.39
GC content: 72.14
Gene sequence:
>384_bases GTGGCCGAGTCCATGGCCCCCCTCGAAGAGGTTGAAGCGCAGCTGACCCGCATCAGCCACTGCATCGCCGAGGCCGTGGC GGCGGTGTGCAGCGATCCCGGTGCGTCGCCGGTACTGCGGGCGGTGTTCGAGGAGCTGCTGCGCAAGAGCGAGGCCACCC TCAACTGCGTCGAGTGCCAGCGCCTGTGCTGCTTCCGCGCCCGGGTGATCGAACTCGAGCAGGCGGCGGATTCGGCGCGG GCGGCGGCCATCGCCGACGAGGGTGCCGGCGAGCAGACCCAGGAGCGGATCCTCGCTGCCCACGACGCCCTGCGCGATCT CAAGGAGGTGGCGCAGCGCGGCCTGCGCTGCTGCGAGGCCCTCGGCGCGTGCCAGCGCAGTTGA
Upstream 100 bases:
>100_bases GGAGGCGCGGCGCTAGGCCGCCAGTCGGGCACTTGTGATTGTGGAGTCTCACCCGCATCATTAGGGGAGAGCAGGTTGTT CCGCAGCGGAGGTAACCCCA
Downstream 100 bases:
>100_bases CACGCCGGCCCAGGGCCGCTATTTTCCGTTCTACTACATCAGCGCGTCGCGCGCCGGCTCCTGGGGCAGCGCAGCGCCCA ATCCCGCACTCGGCCCCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MAESMAPLEEVEAQLTRISHCIAEAVAAVCSDPGASPVLRAVFEELLRKSEATLNCVECQRLCCFRARVIELEQAADSAR AAAIADEGAGEQTQERILAAHDALRDLKEVAQRGLRCCEALGACQRS
Sequences:
>Translated_127_residues MAESMAPLEEVEAQLTRISHCIAEAVAAVCSDPGASPVLRAVFEELLRKSEATLNCVECQRLCCFRARVIELEQAADSAR AAAIADEGAGEQTQERILAAHDALRDLKEVAQRGLRCCEALGACQRS >Mature_126_residues AESMAPLEEVEAQLTRISHCIAEAVAAVCSDPGASPVLRAVFEELLRKSEATLNCVECQRLCCFRARVIELEQAADSARA AAIADEGAGEQTQERILAAHDALRDLKEVAQRGLRCCEALGACQRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13657; Mature: 13525
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 8.7 %Cys+Met (Translated Protein) 7.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESMAPLEEVEAQLTRISHCIAEAVAAVCSDPGASPVLRAVFEELLRKSEATLNCVECQ CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLCCFRARVIELEQAADSARAAAIADEGAGEQTQERILAAHDALRDLKEVAQRGLRCCEA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGACQRS HHHHCCC >Mature Secondary Structure AESMAPLEEVEAQLTRISHCIAEAVAAVCSDPGASPVLRAVFEELLRKSEATLNCVECQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLCCFRARVIELEQAADSARAAAIADEGAGEQTQERILAAHDALRDLKEVAQRGLRCCEA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGACQRS HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA