| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is ydjX [C]
Identifier: 121998698
GI number: 121998698
Start: 2115235
End: 2115951
Strand: Reverse
Name: ydjX [C]
Synonym: Hhal_1919
Alternate gene names: 121998698
Gene position: 2115951-2115235 (Counterclockwise)
Preceding gene: 121998699
Following gene: 121998697
Centisome position: 79.0
GC content: 71.97
Gene sequence:
>717_bases GTGAACGGAACGACCCTGCGTTGGACCACCCTCGGCGCCCGCGCCGCTCTGGCGATGCTGTTGGTGGCGCTGCTCGGGGC CCTGTGGGCCGGGAGTGCCCCCGAGTGGGCCTGGGTGCACGGCCAGCTGCAGCAGCTCCGGCAGCTGGCCGAGTCGCAGC CGGTGCAGGCGGCGCTCGCCTTCCTGGCCCTGCGTTTTTTCTTCTCGGTGGTCTCGGTGCCCGGCAGCGGGGTGCTGACC GTTGCCGGCGGGGTCATGTTCGGGTTCTGGGCGGGGCTGGCGCTGGTCCTGGTGGCGGTGAGCACCGGCGCGCTGGCGAT CTTCCTGCTCACCCGCTACGCCCTCCACGATGCGGTGCGCCGCCGGTTCCCGGACGCCCTGCAGCGTGTGGACCGGCACT GTGCCGATCACGGGCCGAGTGCGCTGTTCCTGCTGCGCATCGCCGAGCCGTTCCCCACTTTCCTGATCAACGCGCTCTTT GCGCTGACCCGGATGCCGGCGCGGACCTACTTCTGGGTGAGCCTGCTGGGCATGCTCCCTGGCGTGACCATCCTCACCAA CGCCGGGGCGCATCTGGAGGCGGTCCACACCCCGGCGGAGCTGATGAGCACTGGGATGATCGCCTCGCTGGTGGCGTTGG GCGCGCTGCCCCTGCTCTCCAGCCTCGCCGCGGCGCGGCTGCGTCGGCGAGGCGCCAGCGGCGGGCCGGAGGGTTAA
Upstream 100 bases:
>100_bases GGGGCCCGCTGGTCGGCGAGTCGGTGGCGGGTAGCTGCCGGCACCGGATGCCGACCTTCGATCGCACCGAGCTCTTTCTC CACCCGGCACCGGTGAACCT
Downstream 100 bases:
>100_bases AAGCACCGGCGAGGTCTCTCGCCCCGGGGGCGGTGGTGTCCGCGTCAGCGGCCTAGACTGGACACTAACCGTTGCTGCGC CGTTGCGAGGGCCCCGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Mercuric Reductase; SNARE Associated Golgi Protein-Related Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; tRNA Uridine 5-Carboxymethylaminomethyl GidA; Dihydrolipoamide Dehydrogenase; Pyridine Nucleotide-Disulphide Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; Snare Associated Golgi Protein-Related Protein; SNARE Associated Golgi Protein-Like Protein
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MNGTTLRWTTLGARAALAMLLVALLGALWAGSAPEWAWVHGQLQQLRQLAESQPVQAALAFLALRFFFSVVSVPGSGVLT VAGGVMFGFWAGLALVLVAVSTGALAIFLLTRYALHDAVRRRFPDALQRVDRHCADHGPSALFLLRIAEPFPTFLINALF ALTRMPARTYFWVSLLGMLPGVTILTNAGAHLEAVHTPAELMSTGMIASLVALGALPLLSSLAAARLRRRGASGGPEG
Sequences:
>Translated_238_residues MNGTTLRWTTLGARAALAMLLVALLGALWAGSAPEWAWVHGQLQQLRQLAESQPVQAALAFLALRFFFSVVSVPGSGVLT VAGGVMFGFWAGLALVLVAVSTGALAIFLLTRYALHDAVRRRFPDALQRVDRHCADHGPSALFLLRIAEPFPTFLINALF ALTRMPARTYFWVSLLGMLPGVTILTNAGAHLEAVHTPAELMSTGMIASLVALGALPLLSSLAAARLRRRGASGGPEG >Mature_238_residues MNGTTLRWTTLGARAALAMLLVALLGALWAGSAPEWAWVHGQLQQLRQLAESQPVQAALAFLALRFFFSVVSVPGSGVLT VAGGVMFGFWAGLALVLVAVSTGALAIFLLTRYALHDAVRRRFPDALQRVDRHCADHGPSALFLLRIAEPFPTFLINALF ALTRMPARTYFWVSLLGMLPGVTILTNAGAHLEAVHTPAELMSTGMIASLVALGALPLLSSLAAARLRRRGASGGPEG
Specific function: Unknown
COG id: COG0398
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25263; Mature: 25263
Theoretical pI: Translated: 11.84; Mature: 11.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGTTLRWTTLGARAALAMLLVALLGALWAGSAPEWAWVHGQLQQLRQLAESQPVQAALA CCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH FLALRFFFSVVSVPGSGVLTVAGGVMFGFWAGLALVLVAVSTGALAIFLLTRYALHDAVR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRFPDALQRVDRHCADHGPSALFLLRIAEPFPTFLINALFALTRMPARTYFWVSLLGMLP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GVTILTNAGAHLEAVHTPAELMSTGMIASLVALGALPLLSSLAAARLRRRGASGGPEG CHHEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNGTTLRWTTLGARAALAMLLVALLGALWAGSAPEWAWVHGQLQQLRQLAESQPVQAALA CCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH FLALRFFFSVVSVPGSGVLTVAGGVMFGFWAGLALVLVAVSTGALAIFLLTRYALHDAVR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRFPDALQRVDRHCADHGPSALFLLRIAEPFPTFLINALFALTRMPARTYFWVSLLGMLP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GVTILTNAGAHLEAVHTPAELMSTGMIASLVALGALPLLSSLAAARLRRRGASGGPEG CHHEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA