| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998502
Identifier: 121998502
GI number: 121998502
Start: 1890125
End: 1890544
Strand: Reverse
Name: 121998502
Synonym: Hhal_1723
Alternate gene names: NA
Gene position: 1890544-1890125 (Counterclockwise)
Preceding gene: 121998503
Following gene: 121998501
Centisome position: 70.58
GC content: 62.86
Gene sequence:
>420_bases ATGGGATCAGGGAGAGTGTCCATGGGCACGGACCCGAAGGCGACGGTCGAGCGTTATCTGCAGGCCCTCGAGGACCGGGA TTACGAGGCCGCGCGCGCCTGCCTCGCCGGGCAGGGGTTTCGCTACGAGAGTCCCATCGCCAGCTACACTCGGGCCGAAG ACCTGCTGGATCACGCCATGGTCGGCGGGTCGATTGTCCAGCAGCGGCAGGTGGTCAAGTGCTTTGTAGACGGTCCCGAT GTCTGCCACTTCCTGCGCTACTGCATCCAACTCTCCGACAAGCAACAGATCGACCTGGCCCACTGGGCGCAGGTCGAGCA AGGGCGCATCCTACGCATCGTGGCCATCTTCGACGCCTACGCCTACTGGTCGATGTTCGAGGATTTGGAGCCCCAGGGGA AGCCGTGCAAATCGATTTAG
Upstream 100 bases:
>100_bases AGCCTGGAAAAGCAGTGAGTTCGGTCTTTTTAAAACAAGCGGAACCTGCGGGTTCCGCTTCTACCAGGGTGATGAAAAGA CTTTTTCATCACCCTGGTAG
Downstream 100 bases:
>100_bases CTGCCGCTCCGGCGGACCCAGGCGTCTACGATGAACGCAAACGCCGCTTGGTCGAGACCTTCACCAAACTCTACCTGCGC GGATCCTGGCGCCCCCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MGSGRVSMGTDPKATVERYLQALEDRDYEAARACLAGQGFRYESPIASYTRAEDLLDHAMVGGSIVQQRQVVKCFVDGPD VCHFLRYCIQLSDKQQIDLAHWAQVEQGRILRIVAIFDAYAYWSMFEDLEPQGKPCKSI
Sequences:
>Translated_139_residues MGSGRVSMGTDPKATVERYLQALEDRDYEAARACLAGQGFRYESPIASYTRAEDLLDHAMVGGSIVQQRQVVKCFVDGPD VCHFLRYCIQLSDKQQIDLAHWAQVEQGRILRIVAIFDAYAYWSMFEDLEPQGKPCKSI >Mature_138_residues GSGRVSMGTDPKATVERYLQALEDRDYEAARACLAGQGFRYESPIASYTRAEDLLDHAMVGGSIVQQRQVVKCFVDGPDV CHFLRYCIQLSDKQQIDLAHWAQVEQGRILRIVAIFDAYAYWSMFEDLEPQGKPCKSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15711; Mature: 15580
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSGRVSMGTDPKATVERYLQALEDRDYEAARACLAGQGFRYESPIASYTRAEDLLDHAM CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VGGSIVQQRQVVKCFVDGPDVCHFLRYCIQLSDKQQIDLAHWAQVEQGRILRIVAIFDAY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEHHHHHHHHH AYWSMFEDLEPQGKPCKSI HHHHHHHHCCCCCCCCCCC >Mature Secondary Structure GSGRVSMGTDPKATVERYLQALEDRDYEAARACLAGQGFRYESPIASYTRAEDLLDHAM CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VGGSIVQQRQVVKCFVDGPDVCHFLRYCIQLSDKQQIDLAHWAQVEQGRILRIVAIFDAY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEHHHHHHHHH AYWSMFEDLEPQGKPCKSI HHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA