| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998500
Identifier: 121998500
GI number: 121998500
Start: 1887568
End: 1888644
Strand: Reverse
Name: 121998500
Synonym: Hhal_1721
Alternate gene names: NA
Gene position: 1888644-1887568 (Counterclockwise)
Preceding gene: 121998501
Following gene: 121998499
Centisome position: 70.51
GC content: 64.44
Gene sequence:
>1077_bases ATGTCGGGTCGCAGTCTCTATACCCTGATGTACGTGGTGGCGACCGCCATCTGCGTCGGGATCAGCGTCTACCTCTCTTA CTACGGCTACTATAGCCACTTGCAGGAACTGGCCATCTTCTTCGCCATCCTGTTGGGCATCTTCCTGTTCGGGACCGACA TGCTGCTGCGCCGCTTTCGGCTCGAGGGGCGCAGTCCGCTCAAGCCTCTGGCGTTCTTTGTCATCGTTGCCTTTTTCAGT GGCGCGAGTAACTACAACTTCCTCTACACCAACTTCATGGAGCGCGACATGGCCGAGCGCGTGGTCAGCGACCAGTTCTC GGTCTTCCGCGACGATCTTACCGCGACGCGCAACGCACTGGCCGATGCGCCGGTCATCGAGCAGGTGGCCGAACAGCGGC GCGAATTGGCCCGCTCGCTCGACAACCTCGACACCCAGATCAACGATCCGCTGCGCCCGGGTTGCGGGGCGCGCTGCCGC GAGCATATCGAGGAGATCCACGACCAGCTTGGTGGGACGCCCACAGAGCTCGCCGTGCCGTCGCCGGACGCCGGCGACGA GGCCAACGAACGCTGGTATGAGCACTTTCGTGCGGCGGTTATCAACGACTTCGAGAACGGCGTCGTGCCCGCCGCGTACC ACCGGGCCCGAGAGCTGATCGGGCAGATCGATGGGCTTCTAGATCGTTACGACGATCCCTACCGGGCGCTGGCCGAGGAG CTGGAGCAGCGTGATCGTGCCCTGCTTGAGCATCGGGATTTCGAGATCATCGCCGACCTGCGTACCCATTCGCGCGAGGT GCAGCGTCGCGCCAATGTGCTCCTACCCGAAGAGGCCGTTGTCCAGCACCGTGTCATCCGCTCGGACCTGGACAAGCTCG GTGAAATCCCCATCAGTGTGCGCGACGGCTTTGTGGATCGCCCCAATCCCGGGGTGACGGCGGTGTCGGTGATCCTCGGC GTGTTCGTCGATGTGGCCCCGGTGCTCTTCGCCTGGCTGATCTTTGCACCGGCTGCGGCCGGCGCGCGGGGGGGCAGCGC AGCCGGGCGGGGCCGTAATCGGGTGGCCACGCGCTAG
Upstream 100 bases:
>100_bases CGCGCCGGTATGACGCGGGTACTAGCTTTGGGCCCCCGCGCCGTAGGAGACTAAGGGATCATGCTCAGGCTCCAAGATGA GCGCCGTTCGGGTCGTGCCG
Downstream 100 bases:
>100_bases CGGGCAAGGAGGGGAGCAGTGGTCGAACCCAGGGAGTCACGCTGGCAGTTGCGGCGCTATTACGAGCGCCGACCGGAGCA GGAGCAGCCCGTCACCGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSGRSLYTLMYVVATAICVGISVYLSYYGYYSHLQELAIFFAILLGIFLFGTDMLLRRFRLEGRSPLKPLAFFVIVAFFS GASNYNFLYTNFMERDMAERVVSDQFSVFRDDLTATRNALADAPVIEQVAEQRRELARSLDNLDTQINDPLRPGCGARCR EHIEEIHDQLGGTPTELAVPSPDAGDEANERWYEHFRAAVINDFENGVVPAAYHRARELIGQIDGLLDRYDDPYRALAEE LEQRDRALLEHRDFEIIADLRTHSREVQRRANVLLPEEAVVQHRVIRSDLDKLGEIPISVRDGFVDRPNPGVTAVSVILG VFVDVAPVLFAWLIFAPAAAGARGGSAAGRGRNRVATR
Sequences:
>Translated_358_residues MSGRSLYTLMYVVATAICVGISVYLSYYGYYSHLQELAIFFAILLGIFLFGTDMLLRRFRLEGRSPLKPLAFFVIVAFFS GASNYNFLYTNFMERDMAERVVSDQFSVFRDDLTATRNALADAPVIEQVAEQRRELARSLDNLDTQINDPLRPGCGARCR EHIEEIHDQLGGTPTELAVPSPDAGDEANERWYEHFRAAVINDFENGVVPAAYHRARELIGQIDGLLDRYDDPYRALAEE LEQRDRALLEHRDFEIIADLRTHSREVQRRANVLLPEEAVVQHRVIRSDLDKLGEIPISVRDGFVDRPNPGVTAVSVILG VFVDVAPVLFAWLIFAPAAAGARGGSAAGRGRNRVATR >Mature_357_residues SGRSLYTLMYVVATAICVGISVYLSYYGYYSHLQELAIFFAILLGIFLFGTDMLLRRFRLEGRSPLKPLAFFVIVAFFSG ASNYNFLYTNFMERDMAERVVSDQFSVFRDDLTATRNALADAPVIEQVAEQRRELARSLDNLDTQINDPLRPGCGARCRE HIEEIHDQLGGTPTELAVPSPDAGDEANERWYEHFRAAVINDFENGVVPAAYHRARELIGQIDGLLDRYDDPYRALAEEL EQRDRALLEHRDFEIIADLRTHSREVQRRANVLLPEEAVVQHRVIRSDLDKLGEIPISVRDGFVDRPNPGVTAVSVILGV FVDVAPVLFAWLIFAPAAAGARGGSAAGRGRNRVATR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40193; Mature: 40062
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRSLYTLMYVVATAICVGISVYLSYYGYYSHLQELAIFFAILLGIFLFGTDMLLRRFR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEGRSPLKPLAFFVIVAFFSGASNYNFLYTNFMERDMAERVVSDQFSVFRDDLTATRNAL HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAPVIEQVAEQRRELARSLDNLDTQINDPLRPGCGARCREHIEEIHDQLGGTPTELAVP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC SPDAGDEANERWYEHFRAAVINDFENGVVPAAYHRARELIGQIDGLLDRYDDPYRALAEE CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LEQRDRALLEHRDFEIIADLRTHSREVQRRANVLLPEEAVVQHRVIRSDLDKLGEIPISV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHH RDGFVDRPNPGVTAVSVILGVFVDVAPVLFAWLIFAPAAAGARGGSAAGRGRNRVATR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SGRSLYTLMYVVATAICVGISVYLSYYGYYSHLQELAIFFAILLGIFLFGTDMLLRRFR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEGRSPLKPLAFFVIVAFFSGASNYNFLYTNFMERDMAERVVSDQFSVFRDDLTATRNAL HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAPVIEQVAEQRRELARSLDNLDTQINDPLRPGCGARCREHIEEIHDQLGGTPTELAVP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC SPDAGDEANERWYEHFRAAVINDFENGVVPAAYHRARELIGQIDGLLDRYDDPYRALAEE CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LEQRDRALLEHRDFEIIADLRTHSREVQRRANVLLPEEAVVQHRVIRSDLDKLGEIPISV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHH RDGFVDRPNPGVTAVSVILGVFVDVAPVLFAWLIFAPAAAGARGGSAAGRGRNRVATR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA