| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998226
Identifier: 121998226
GI number: 121998226
Start: 1556837
End: 1557220
Strand: Reverse
Name: 121998226
Synonym: Hhal_1444
Alternate gene names: NA
Gene position: 1557220-1556837 (Counterclockwise)
Preceding gene: 121998229
Following gene: 121998225
Centisome position: 58.14
GC content: 68.23
Gene sequence:
>384_bases ATGCACGATCACGCTGGCGATGGCCCCCTGGAACGGCGGGTGCTTGAGGCCATTCGGCGAGTGGCTGCAGTCTTCGCCGA TCCGCTCCTGGCGCCGCTGGATGCTGGCGCCGATGGTGTGGCCGAGCGCCCGCCTGCGGAAGGTGACGAGCAGCCCGAAT ATGTGCTGGCGTTGACCAGCACCGCCGGATGCCGGGTCGAGGTGCGCATTCCGGAGGCGGATCTGCTGGCGCTGGAGGGA GATGGCGTTGCCCATTCGGTCTATCAGACCCTGGTGCGTGAGTGCGGCGCCCACCTGGCCGAGCGCGAGACGCTGATCGT CACCACTCGCGGGCGTCCGGGTCCGGGCCAGTTGTTCCGTGTTTATCGACAGCGGCTCGGGTAG
Upstream 100 bases:
>100_bases GCGTGTGGGGTTGCGATCGGGCCTGCCAATCGCCATTGTCCCGCAAATGGCGCCGTGCGTCGACGGTGGTGCACTCGGGG CCATCGGAGGAGGGGTGTAG
Downstream 100 bases:
>100_bases GCCAACCCGCCGTCCCCACAGGGGTTTCGCTTCTGGTAAGGTACGGCCAGCACGCAGGCTGCCTGCGGTATTCGCCCGCC CATCCGAGAGGTCAACGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 127
Protein sequence:
>127_residues MHDHAGDGPLERRVLEAIRRVAAVFADPLLAPLDAGADGVAERPPAEGDEQPEYVLALTSTAGCRVEVRIPEADLLALEG DGVAHSVYQTLVRECGAHLAERETLIVTTRGRPGPGQLFRVYRQRLG
Sequences:
>Translated_127_residues MHDHAGDGPLERRVLEAIRRVAAVFADPLLAPLDAGADGVAERPPAEGDEQPEYVLALTSTAGCRVEVRIPEADLLALEG DGVAHSVYQTLVRECGAHLAERETLIVTTRGRPGPGQLFRVYRQRLG >Mature_127_residues MHDHAGDGPLERRVLEAIRRVAAVFADPLLAPLDAGADGVAERPPAEGDEQPEYVLALTSTAGCRVEVRIPEADLLALEG DGVAHSVYQTLVRECGAHLAERETLIVTTRGRPGPGQLFRVYRQRLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13689; Mature: 13689
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDHAGDGPLERRVLEAIRRVAAVFADPLLAPLDAGADGVAERPPAEGDEQPEYVLALTS CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC TAGCRVEVRIPEADLLALEGDGVAHSVYQTLVRECGAHLAERETLIVTTRGRPGPGQLFR CCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH VYRQRLG HHHHHCC >Mature Secondary Structure MHDHAGDGPLERRVLEAIRRVAAVFADPLLAPLDAGADGVAERPPAEGDEQPEYVLALTS CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC TAGCRVEVRIPEADLLALEGDGVAHSVYQTLVRECGAHLAERETLIVTTRGRPGPGQLFR CCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH VYRQRLG HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA