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The map label for this gene is clpS

Identifier: 121998183

GI number: 121998183

Start: 1514521

End: 1514841

Strand: Reverse

Name: clpS

Synonym: Hhal_1401

Alternate gene names: 121998183

Gene position: 1514841-1514521 (Counterclockwise)

Preceding gene: 121998184

Following gene: 121998182

Centisome position: 56.56

GC content: 61.06

Gene sequence:

>321_bases
ATGACCGACGAGCCGAACCAAGACGACCCGCAGGGCCCCGAGGTTGAAGCGGCGAAGCCGTCGCTCAAGCAGCCACCGAT
GTACAAGGTGGTGCTGCTGAACGATGACTACACGCCGATGGATTTTGTGGTCGAGGTGCTGCAGCGCTTCTTCAACAAGG
ATCGGAGCCAGGCGACCCAGATCATGCTTCACGTGCACACGCGGGGTAAGGGGGTGTGTGGCGTCTACAGTCGGGACGTG
GCCGAGACCAAGGTCTCCCAAGTCAACGACTACGCCCGCGAGCACGAGCACCCGCTACTGTGTACGATGGAGGAAGCTTG
A

Upstream 100 bases:

>100_bases
GGACCCCGGGACGGTGTAGCCACCGCCCCGGGGTTTTTTTATGGTGACGGTGCGCTCTGACATTGGCCGGTTCGCGCGCG
ACTCTATAAAATGAAGGGCG

Downstream 100 bases:

>100_bases
ATCGTTCCAGGAACCGTGGCGCGGTTGTCCGGTCCAATCCGGGGGTGGTTCCCCGGTCAAGCCCCAGGCGAGGTAATAGG
GCATGCTAAGTAAAGAGTTA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQIMLHVHTRGKGVCGVYSRDV
AETKVSQVNDYAREHEHPLLCTMEEA

Sequences:

>Translated_106_residues
MTDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQIMLHVHTRGKGVCGVYSRDV
AETKVSQVNDYAREHEHPLLCTMEEA
>Mature_105_residues
TDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQIMLHVHTRGKGVCGVYSRDVA
ETKVSQVNDYAREHEHPLLCTMEEA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=91, Percent_Identity=62.6373626373626, Blast_Score=132, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_HALHL (A1WWV6)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002970.1
- ProteinModelPortal:   A1WWV6
- SMR:   A1WWV6
- STRING:   A1WWV6
- GeneID:   4711123
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_1401
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- PhylomeDB:   A1WWV6
- ProtClustDB:   CLSK727402
- BioCyc:   HHAL349124:HHAL_1401-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12106; Mature: 11975

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHE
IMLHVHTRGKGVCGVYSRDVAETKVSQVNDYAREHEHPLLCTMEEA
EEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure 
TDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQ
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHE
IMLHVHTRGKGVCGVYSRDVAETKVSQVNDYAREHEHPLLCTMEEA
EEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA