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The map label for this gene is rarA [H]

Identifier: 121998175

GI number: 121998175

Start: 1504412

End: 1505695

Strand: Reverse

Name: rarA [H]

Synonym: Hhal_1393

Alternate gene names: 121998175

Gene position: 1505695-1504412 (Counterclockwise)

Preceding gene: 121998176

Following gene: 121998174

Centisome position: 56.22

GC content: 70.48

Gene sequence:

>1284_bases
TTGACGGCAGCGCCAAGCGCACCGCTGGCCGAGCGCATGCGCCCGAGGAGCATCGAGGAGATGGCCGGGCAGGGCCACCT
TCTCGATACCGGTCGCGCGCTCGCGCAGAGCGTCGCGGCCGGACGGCCGCACTCCATGATCCTCTGGGGCCCGCCGGGGA
GCGGTAAGACGACGCTCGCCGGTCTGGTGGCTGAGCACGCCGAGGCCCGGTTCCTCACCCTCTCCGCAGTTGCCGCCGGG
GTGCGGGAGATTCGGGCCGCCATGGCCGAGGCGACCGACCTCTGGCAGGCCGGTCGGCGCACCGTACTCTTCGTCGATGA
GGTGCACCGGTTCAACAAGGCGCAGCAGGACGCCTTCCTGCCCCATGTGGAGGACGGTACGGTGGTCTTCGTCGGGGCCA
CCACCGAAAACCCTTCCTTCGAGCTCAACAAGGCGCTGCTCTCCCGGGCGCGCGTCTACATGCTCCGCGCCCTGGACGAG
GCGGCCCTGACGAACCTGCTCGAGCGGGCGCTGAGCGACCCGGAACGGGGGCTCGGTGGCCGCCAGCTGCAGGTGACGGA
GGCGGCCCGGGCGCTGCTCCTGCGCGCAGCCGACGGGGATGCCCGGCGATTACTCTCGGCCCTGGAGATTGCCGCGGATC
TGGCTGAATCGGGGGTGCTCGATGCCGAAGTGGTCACCGAGGCCGTGGCCGGCGGGGCCCGGCGTTTCGACAAGGGTGGC
GACGACTTCTACGACCAGATCTCGGCGTTGCATAAGTCGATTCGTGGCTCGGATCCGGACGCCGCCCTGTACTGGTTGGC
GCGCATGCTTGATGGCGGCTGCGACCCGCTCTACATCGCCCGTCGGCTGATCCGGGTGGCCTCGGAAGACATCGGCAATG
CGGACCCCCGCGCCCTCCAGGTGGCGCTGAATGCCGCCGAGGCTTATGAGCGCCTGGGCTCGCCAGAGGGCGATCTGGCC
CTGGCCCACGCCGCCGCGTACCAGGCCTCGGTCCCCAAGAGCAACCGTGTCTACACGGCCTGGCAGGCCGCCGAGCAGGA
CGTGCGCCGGCACGGCTCGCTGGAGGTGCCGATGCACCTGCGTAACGCCCCGACCGGGATGATGAAGGAGCAGGGCTTCG
GTAGTGGTTACCGCTACGCCCACGACGAGCCGGAGGCCTTCGCCGCCGGCGTCGAGTACATGCCGGATGCGCTCGCCGGC
ACCCGTTACTATGAACCGAGCGATCGCGGGCTGGAGCAGCGCATCGCCGAGCGCTTCCGGCGGCTGCGTGCCCGGCAGGG
GTGA

Upstream 100 bases:

>100_bases
ACGAGGTGCGGCTCAACGATGCCGTGGACGAAGAGCGCTTCCGCTTCGAGCCGCCCGAGGGGGTGGATGTCTACGAGGCC
GATCCGGACGAGGGCATCCG

Downstream 100 bases:

>100_bases
TCGGTGCCGTGGCGCCGACCGCCTGGAAGTCTTTAAAATGCCCGCCGCCCATGGCGCCCGCCCCGGAACAAGGAGCCTGC
GACACCCATGATCGACCCCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MTAAPSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLAGLVAEHAEARFLTLSAVAAG
VREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDE
AALTNLLERALSDPERGLGGRQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEVVTEAVAGGARRFDKGG
DDFYDQISALHKSIRGSDPDAALYWLARMLDGGCDPLYIARRLIRVASEDIGNADPRALQVALNAAEAYERLGSPEGDLA
LAHAAAYQASVPKSNRVYTAWQAAEQDVRRHGSLEVPMHLRNAPTGMMKEQGFGSGYRYAHDEPEAFAAGVEYMPDALAG
TRYYEPSDRGLEQRIAERFRRLRARQG

Sequences:

>Translated_427_residues
MTAAPSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLAGLVAEHAEARFLTLSAVAAG
VREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDE
AALTNLLERALSDPERGLGGRQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEVVTEAVAGGARRFDKGG
DDFYDQISALHKSIRGSDPDAALYWLARMLDGGCDPLYIARRLIRVASEDIGNADPRALQVALNAAEAYERLGSPEGDLA
LAHAAAYQASVPKSNRVYTAWQAAEQDVRRHGSLEVPMHLRNAPTGMMKEQGFGSGYRYAHDEPEAFAAGVEYMPDALAG
TRYYEPSDRGLEQRIAERFRRLRARQG
>Mature_426_residues
TAAPSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLAGLVAEHAEARFLTLSAVAAGV
REIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDEA
ALTNLLERALSDPERGLGGRQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEVVTEAVAGGARRFDKGGD
DFYDQISALHKSIRGSDPDAALYWLARMLDGGCDPLYIARRLIRVASEDIGNADPRALQVALNAAEAYERLGSPEGDLAL
AHAAAYQASVPKSNRVYTAWQAAEQDVRRHGSLEVPMHLRNAPTGMMKEQGFGSGYRYAHDEPEAFAAGVEYMPDALAGT
RYYEPSDRGLEQRIAERFRRLRARQG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=42.0454545454545, Blast_Score=314, Evalue=1e-85,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.9545454545455, Blast_Score=257, Evalue=2e-68,
Organism=Escherichia coli, GI1787119, Length=417, Percent_Identity=56.1151079136691, Blast_Score=470, Evalue=1e-134,
Organism=Escherichia coli, GI1786676, Length=251, Percent_Identity=31.0756972111554, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=421, Percent_Identity=41.8052256532066, Blast_Score=306, Evalue=3e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 46265; Mature: 46133

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLA
CCCCCCCCHHHHCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
GLVAEHAEARFLTLSAVAAGVREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC
PHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDEAALTNLLERALSDPERGLGG
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEVVTEAVAGGARRFDKGG
CEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC
DDFYDQISALHKSIRGSDPDAALYWLARMLDGGCDPLYIARRLIRVASEDIGNADPRALQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
VALNAAEAYERLGSPEGDLALAHAAAYQASVPKSNRVYTAWQAAEQDVRRHGSLEVPMHL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHH
RNAPTGMMKEQGFGSGYRYAHDEPEAFAAGVEYMPDALAGTRYYEPSDRGLEQRIAERFR
CCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHH
RLRARQG
HHHCCCC
>Mature Secondary Structure 
TAAPSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLA
CCCCCCCHHHHCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
GLVAEHAEARFLTLSAVAAGVREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC
PHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDEAALTNLLERALSDPERGLGG
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEVVTEAVAGGARRFDKGG
CEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC
DDFYDQISALHKSIRGSDPDAALYWLARMLDGGCDPLYIARRLIRVASEDIGNADPRALQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
VALNAAEAYERLGSPEGDLALAHAAAYQASVPKSNRVYTAWQAAEQDVRRHGSLEVPMHL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHH
RNAPTGMMKEQGFGSGYRYAHDEPEAFAAGVEYMPDALAGTRYYEPSDRGLEQRIAERFR
CCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHH
RLRARQG
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]