| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121998056
Identifier: 121998056
GI number: 121998056
Start: 1372397
End: 1372726
Strand: Reverse
Name: 121998056
Synonym: Hhal_1266
Alternate gene names: NA
Gene position: 1372726-1372397 (Counterclockwise)
Preceding gene: 121998057
Following gene: 121998053
Centisome position: 51.25
GC content: 62.12
Gene sequence:
>330_bases ATGAGTTTGACCGACAAGACGTGCGTGCCGTGCCAGGGTGGTGTGGCACCCATGGATCGGCAGCAGGCCGAGCAGATGCT GGTGCAGGTGCCGGAGTGGTCGCTGGACACCGACGCCCGCATGATCTATCGACGCTTTAAATTCCGTAACTTCATCGATG CGCTGTCTTTCGTCAACCGAGTCACCGAGGTGGCCGAGGCGGAGGACCACCACCCGGATATCCTCCTCGGATACGGCTAC GCCGAGGTGCGGATCCAGACGCACAAGATCGAGGGGCTGCACGAGAACGACTTCATCCTGGCGGCCAAGGTGGACGCGCT CGGCGCTTAG
Upstream 100 bases:
>100_bases TCCCCTGAGTGAATCCCGCGGGCTGTTTTGGGTGTCTCCTCTGCCCGTCATGCACCTAGACTGGGGGGACGCCTGATCAA CGACGGTGGAGGTTGGCGCC
Downstream 100 bases:
>100_bases CCGGGATCGTCACCCCAGTGCCCGGAGCGTCCGCCCCGCTTGTGGACGAGGCGGACGCCACCGATCTCCATGCCTCGGTC GAGCCCCTTGCACATGTCGT
Product: transcriptional coactivator/pterin dehydratase
Products: NA
Alternate protein names: PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MSLTDKTCVPCQGGVAPMDRQQAEQMLVQVPEWSLDTDARMIYRRFKFRNFIDALSFVNRVTEVAEAEDHHPDILLGYGY AEVRIQTHKIEGLHENDFILAAKVDALGA
Sequences:
>Translated_109_residues MSLTDKTCVPCQGGVAPMDRQQAEQMLVQVPEWSLDTDARMIYRRFKFRNFIDALSFVNRVTEVAEAEDHHPDILLGYGY AEVRIQTHKIEGLHENDFILAAKVDALGA >Mature_108_residues SLTDKTCVPCQGGVAPMDRQQAEQMLVQVPEWSLDTDARMIYRRFKFRNFIDALSFVNRVTEVAEAEDHHPDILLGYGYA EVRIQTHKIEGLHENDFILAAKVDALGA
Specific function: Unknown
COG id: COG2154
COG function: function code H; Pterin-4a-carbinolamine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pterin-4-alpha-carbinolamine dehydratase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PHS_HALHL (A1WWH9)
Other databases:
- EMBL: CP000544 - RefSeq: YP_001002843.1 - ProteinModelPortal: A1WWH9 - SMR: A1WWH9 - STRING: A1WWH9 - GeneID: 4710735 - GenomeReviews: CP000544_GR - KEGG: hha:Hhal_1266 - eggNOG: COG2154 - HOGENOM: HBG705804 - OMA: ILTEWGK - BioCyc: HHAL349124:HHAL_1266-MONOMER - HAMAP: MF_00434 - InterPro: IPR001533 - Gene3D: G3DSA:3.30.1360.20 - PANTHER: PTHR12599
Pfam domain/function: PF01329 Pterin_4a; SSF55248 Trans_pterinDh
EC number: =4.2.1.96
Molecular weight: Translated: 12364; Mature: 12233
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTDKTCVPCQGGVAPMDRQQAEQMLVQVPEWSLDTDARMIYRRFKFRNFIDALSFVNR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VTEVAEAEDHHPDILLGYGYAEVRIQTHKIEGLHENDFILAAKVDALGA HHHHHHCCCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEECCCCCC >Mature Secondary Structure SLTDKTCVPCQGGVAPMDRQQAEQMLVQVPEWSLDTDARMIYRRFKFRNFIDALSFVNR CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VTEVAEAEDHHPDILLGYGYAEVRIQTHKIEGLHENDFILAAKVDALGA HHHHHHCCCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA