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The map label for this gene is ribD [H]

Identifier: 121997691

GI number: 121997691

Start: 975648

End: 976763

Strand: Reverse

Name: ribD [H]

Synonym: Hhal_0900

Alternate gene names: 121997691

Gene position: 976763-975648 (Counterclockwise)

Preceding gene: 121997692

Following gene: 121997690

Centisome position: 36.47

GC content: 77.06

Gene sequence:

>1116_bases
GTGACGACGACTGACCGGCACCCGGACGATCCCCGCTGGATGGCCCGCGCCATTCGGCGGGCGGCCGCGGTATGCCCGCC
GCCGCACCCCAATCCGCGGGTCGGCTGCGTGCTGGTCCGCGACGGCAGCGTGCTGGCCGAGGCCGCCCACGAACAGGCTG
GCGGGCCGCACGCCGAGGCAGCGGCCCTGCAGGCCGCCGGCGGCGCGGCCCATGGGGCCACCGCCTACGTGACCCTGGAG
CCGTGCGCCCACTACGGGCGCACGCCCCCTTGCGCCCGCGCCCTGATCGACGCCGGCGTCAGCCGGGTCGTGGTCGGGCA
CCGCGACCCCAACCCCCGGGTGGCCGGGGGCGGTATCGCGCAGCTCGAGGCCGCCGGGGTGGCGGTCACCGAGGGCGTGC
TGGCCGCCGATGCCGAGGCCCTCAACCGCGGCTTCCTGCGCCGGATGGCCGGCGGGCGGCCGTGGGTGCGGGTCAAGCTG
GCGGCGAGCCTGGACGGGCGGACCGCCATGGCCTCCGGCGAGAGCCATTGGATCACCTCGGCGGCGGCGCGCCGCGACGT
CCACCGGGGGCGCGCAGAGGCCGCAGCGGTGCTCACCGGGGTGGGGACCGTGCGCGCCGACGACCCGCGCCTCGACGCCC
GCGACGTCGAGCCGGCGGTGCCGGCCGAGCGTCAGCCCCAGCGCGTGGTCCTCGACCCGCGCCTGACCACGCCGCCACAC
GCGGCCCTGTTCCAGGCCCCGGGGCCGGTGCTCATCGGCCACGCCGAGTACGTCAACGAGGCCCGGGCCCGGGCGCTGCG
CAGCTGCGGGGCCGAGCTGTTGCCGCTCCCGCTGCAGGAGGGCGGCCTCGACCTGGCTGCCGTGCTCGACGCCCTGGCGG
CGCGCGAGATCAACGAGGTCTGGGTGGAGGCCGGCCCCACGCTGGCTGGCTCCTGGGTGCGGGGCGGGTGGGCCGACGAG
CTGATCGTCTACACCGCACCCCACCTGATGGGCGACGCCGCCCGGCCGTTGCTGGCCCTGCCCGGCATCGAGACCATGGC
GCAGCGCCAACCGCTGGCGTTCAGCGATGTCCGGCGGGTGGGTGAGGAAATCCGCATCACCGCGAGGTTGGTTTAA

Upstream 100 bases:

>100_bases
CTCGACGTGGTCGCCTATGTCCGTTTCGCCTCGGTCTACCGGCGCTTCGAGGATGTCGGCGCCTTCCGCGAGGTCATTGA
GGGCCTGGAGCAGCACCGGC

Downstream 100 bases:

>100_bases
CCGCATGTTCACCGGGATCGTGGAGACCTGCGGCCGCGTGGCCGCCATCGAGCACAGCGGCGAGGGGCGGATCCTGCGCA
TCGATGCTCCCCGGCTGGGC

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MTTTDRHPDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLE
PCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRRMAGGRPWVRVKL
AASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPH
AALFQAPGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADE
LIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIRITARLV

Sequences:

>Translated_371_residues
MTTTDRHPDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLE
PCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRRMAGGRPWVRVKL
AASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPH
AALFQAPGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADE
LIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIRITARLV
>Mature_370_residues
TTTDRHPDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLEP
CAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRRMAGGRPWVRVKLA
ASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPHA
ALFQAPGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADEL
IVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIRITARLV

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=364, Percent_Identity=47.5274725274725, Blast_Score=328, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 38958; Mature: 38827

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTDRHPDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHH
AALQAAGGAAHGATAYVTLEPCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIA
HHHHHCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
QLEAAGVAVTEGVLAADAEALNRGFLRRMAGGRPWVRVKLAASLDGRTAMASGESHWITS
HHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCHHHHH
AAARRDVHRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPH
HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
AALFQAPGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEV
HHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
WVEAGPTLAGSWVRGGWADELIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRV
HHHCCCCEECCCCCCCCCCCEEEEECCHHHCCCCCCEEECCCCHHHHHCCCCCHHHHHHH
GEEIRITARLV
HHHEEEEEEEC
>Mature Secondary Structure 
TTTDRHPDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEA
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHH
AALQAAGGAAHGATAYVTLEPCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIA
HHHHHCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
QLEAAGVAVTEGVLAADAEALNRGFLRRMAGGRPWVRVKLAASLDGRTAMASGESHWITS
HHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCHHHHH
AAARRDVHRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPH
HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
AALFQAPGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEV
HHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
WVEAGPTLAGSWVRGGWADELIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRV
HHHCCCCEECCCCCCCCCCCEEEEECCHHHCCCCCCEEECCCCHHHHHCCCCCHHHHHHH
GEEIRITARLV
HHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1406588; 9278503; 9068650 [H]