| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997482
Identifier: 121997482
GI number: 121997482
Start: 769281
End: 769640
Strand: Reverse
Name: 121997482
Synonym: Hhal_0685
Alternate gene names: NA
Gene position: 769640-769281 (Counterclockwise)
Preceding gene: 121997483
Following gene: 121997477
Centisome position: 28.73
GC content: 56.11
Gene sequence:
>360_bases ATGTCTGAACCCGGTGCAAGGCAATGGTCATTTTACTTGGATGACATGATCCGGTTTGCCAATAAGGTGCAGGCTTACAC GGATGGCCTAGATTTCGCTAGTTTCGTGGCGAACGAACTGGTCTATGATGCCACCCTCCGTAACCTGGAGCTGATCGGCG AGGCGGCCACGCATATCCCGGAGCAGGTTCGGTCTTCATCGCCAAAGATCCCTTGGCGCATGATCATTGCGACGCGGAAC AGGCTGATCCACGGTTACCTTGGCATTGACCAGGAAACGGTCTGGAGCATTGTCCGGGAGGAGATCCCCGAGTTGCTGAG GGAGCTTGAGGCCTTGAGAGAGCAGTGCCGCACCCTGTGA
Upstream 100 bases:
>100_bases CAATTCTACCTCGAGGATTTGCTGGGATGCCCGGTGGACTTGGTGACTGAGCAGGCTTTGCGCCGGGAGCTGCGCCCTTA CATCGAGCAGGAGCGCATCA
Downstream 100 bases:
>100_bases TGGCAGGGCACGGCACGGCGATCCGCAATTGATTACTTAGAGCGCCTCCACCCGCCGCTCTTGTTCGGCGACCTTCTCCA GGGCCTGCTGCGCCTCGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MSEPGARQWSFYLDDMIRFANKVQAYTDGLDFASFVANELVYDATLRNLELIGEAATHIPEQVRSSSPKIPWRMIIATRN RLIHGYLGIDQETVWSIVREEIPELLRELEALREQCRTL
Sequences:
>Translated_119_residues MSEPGARQWSFYLDDMIRFANKVQAYTDGLDFASFVANELVYDATLRNLELIGEAATHIPEQVRSSSPKIPWRMIIATRN RLIHGYLGIDQETVWSIVREEIPELLRELEALREQCRTL >Mature_118_residues SEPGARQWSFYLDDMIRFANKVQAYTDGLDFASFVANELVYDATLRNLELIGEAATHIPEQVRSSSPKIPWRMIIATRNR LIHGYLGIDQETVWSIVREEIPELLRELEALREQCRTL
Specific function: Unknown
COG id: COG2361
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0331 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008201 [H]
Pfam domain/function: PF01934 DUF86 [H]
EC number: NA
Molecular weight: Translated: 13796; Mature: 13665
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPGARQWSFYLDDMIRFANKVQAYTDGLDFASFVANELVYDATLRNLELIGEAATHIP CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQVRSSSPKIPWRMIIATRNRLIHGYLGIDQETVWSIVREEIPELLRELEALREQCRTL HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SEPGARQWSFYLDDMIRFANKVQAYTDGLDFASFVANELVYDATLRNLELIGEAATHIP CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQVRSSSPKIPWRMIIATRNRLIHGYLGIDQETVWSIVREEIPELLRELEALREQCRTL HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]