Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 121997477

GI number: 121997477

Start: 762828

End: 763946

Strand: Reverse

Name: lptF [H]

Synonym: Hhal_0680

Alternate gene names: 121997477

Gene position: 763946-762828 (Counterclockwise)

Preceding gene: 121997482

Following gene: 121997476

Centisome position: 28.52

GC content: 73.91

Gene sequence:

>1119_bases
ATGGGGCCGTCACCCTTGGGTCTGAGCATCATCGATCGCTATCTGGTCCGCGAGGCGGCCGGGGCGGCCCTGGCCGTGCT
CGCCGTGCTCTTTGCGGTCCTGTCGGCGAACCAGCTCATCGACTACCTGGCCGATGCCGCCGGCGGGGATCTGCCCGGCG
AGGCGGTGGCCGCGCTCATGGGGCTGCAGATCCTGCGCTATCTGGGGGTGGTGATCCCGGCCGCGCTGTTCCTCGGCATC
GTCCTGGCCCTGGGGCGGCTCTACCGCGACAGCGAGCTGCCCGTGCTCGCCGCCTGCGGCGTCGGTCCCGCGCGGCAGAT
GCGCGGTCTGCTGCTGCTGGCGCTGCCGGTGGCGGTGGGCGTGGGGGCGCTGTCCACCGTGGCCGCGCCGTGGGCCTCGC
ACACCGCCGACGTCTACGCCGAGCAGGCGGCGCGCACCGCCGATCTCGGTGCCCTGCAGGCGGGGCGGTTCATCGGTGGC
GGGGACGCCGGCACCGTCTACGCCAGCCGCACCGACGGTGACGGCGTGCTGCGCGAGGTCTTCGCCCACGCCCGCGACGG
GGAGCTGGAGACCGTGATCCGCGCCGACCGCGGCCGGCAGCTGATCGATCCGGAGACCGGGCAGCGCTTCTTCGTCTTCG
AGGACGGGCACCGCTACGACGGCCATCCGGGGCAGCTGGACTGGCGGGTGACCGACTTCGACCGCCACGGCCTGTTGATC
GACACCCGGGAGCCGCGGGAGGTCAGTCGCGACCGCGAGGGCACGCCGACGGCGGAGCTGTGGGCCGCCGGTGGTTTGCA
GGATCGGGCCGAGATCGAGTGGCGGCTGTCCATGCCGGTGATGGTGGTGGTGCTGAGCCTGCTGGCGGTGCCGCTGGCCA
AGGCCGAGCCCCGGGATGGCCGCTACGGCAAGCTGCTCAGCGCGGTGCTGGTCTTCGTGGCCTACTTCCAGCTGCTGAGC
AGCGGTCGTGAGTGGCTGGAGGCGGGCATCGTGCCGGCGCCCCTGGGGCTGTGGTGGGTCCACCTCCTGGCCGGGGTGGC
CGTGGTGCTGTGGACCCGCCGGCGCTTCGGGGTGGTGCCGGGGTGGTGGCGGCGGCCTGCCGGCCGGAGGGCCGGCTGA

Upstream 100 bases:

>100_bases
CGCGCGCTGGCTCGGTTATGCTCGGCCGCGCTGCGTCGGTTGTCTTGCGCAGGCGCACAGTCTACGGAAATGCGGCGCTT
TTTTGCAGCGCACGCCGGGG

Downstream 100 bases:

>100_bases
TGCGCATCCTCACCGGCTACCTGGCGCGGACGGTCATCGCGGCGTCGCTGGTGGCGCTGGCCGCGATCCTCGCCCTGGAT
TTCGTCTTCAGCATGGTCGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MGPSPLGLSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILRYLGVVIPAALFLGI
VLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTVAAPWASHTADVYAEQAARTADLGALQAGRFIGG
GDAGTVYASRTDGDGVLREVFAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLI
DTREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDGRYGKLLSAVLVFVAYFQLLS
SGREWLEAGIVPAPLGLWWVHLLAGVAVVLWTRRRFGVVPGWWRRPAGRRAG

Sequences:

>Translated_372_residues
MGPSPLGLSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILRYLGVVIPAALFLGI
VLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTVAAPWASHTADVYAEQAARTADLGALQAGRFIGG
GDAGTVYASRTDGDGVLREVFAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLI
DTREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDGRYGKLLSAVLVFVAYFQLLS
SGREWLEAGIVPAPLGLWWVHLLAGVAVVLWTRRRFGVVPGWWRRPAGRRAG
>Mature_371_residues
GPSPLGLSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILRYLGVVIPAALFLGIV
LALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTVAAPWASHTADVYAEQAARTADLGALQAGRFIGGG
DAGTVYASRTDGDGVLREVFAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLID
TREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDGRYGKLLSAVLVFVAYFQLLSS
GREWLEAGIVPAPLGLWWVHLLAGVAVVLWTRRRFGVVPGWWRRPAGRRAG

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=346, Percent_Identity=29.1907514450867, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39959; Mature: 39827

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPSPLGLSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GLQILRYLGVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
VGALSTVAAPWASHTADVYAEQAARTADLGALQAGRFIGGGDAGTVYASRTDGDGVLREV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCHHHHHHH
FAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLI
HHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEE
DTREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDG
ECCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
RYGKLLSAVLVFVAYFQLLSSGREWLEAGIVPAPLGLWWVHLLAGVAVVLWTRRRFGVVP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
GWWRRPAGRRAG
CHHCCCCCCCCC
>Mature Secondary Structure 
GPSPLGLSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GLQILRYLGVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
VGALSTVAAPWASHTADVYAEQAARTADLGALQAGRFIGGGDAGTVYASRTDGDGVLREV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCHHHHHHH
FAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLI
HHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEE
DTREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDG
ECCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
RYGKLLSAVLVFVAYFQLLSSGREWLEAGIVPAPLGLWWVHLLAGVAVVLWTRRRFGVVP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
GWWRRPAGRRAG
CHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]