| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121997441
Identifier: 121997441
GI number: 121997441
Start: 719387
End: 720382
Strand: Reverse
Name: 121997441
Synonym: Hhal_0642
Alternate gene names: NA
Gene position: 720382-719387 (Counterclockwise)
Preceding gene: 121997442
Following gene: 121997440
Centisome position: 26.9
GC content: 63.45
Gene sequence:
>996_bases ATGGCAAAACGCGGCCTGACCGAGAAGGTCCGTCAGGGTCTGTGGCAGGGGCACTACGGCAACCGGGAGCAGTCCCTGGA CCGACCGGGTGACCCGGTCACGGTGACCCAGATGGTGCTTTCCATCGACCAGGTGGTTGAGTACGAGGACAACCCGCGCC GCCTGGAGAATCCCCGTTACGAGGAGATTAAGCAGTCGATTGCTGCGCAGCGCGGGCTCAACAACAGCCTGGATGTGACC CGCCGGCCAGGGGATGAGCATTACATCACCTGTGCCGGCGGCAATACCCGTTTACGCATTCTGCGTGAGCTCTACGCCGA AACGGGGGATGAGGCTTTCGCGCGGATCTACTGCCTCTACCACCCCTGGCAGGGTGAGACCACCGTTCTAACCAGCCACC TGGTCGAGAACGAGCTTCGAGGCGAGCTCGCGCTGATCGATAAGGCCCTTGCGCTGGAGCACCTCCGGAGGCATCTGGAA TCCGAAGTGGGGGAGCGTCTCAGCCGGAATGCCTTCATTACCCGGCTCCATGCCCTTGGTTACACGATCAGTAAGCGTCA ACTGCTCCGGTACGAGTTTGCGGCGCAACACCTGCTGGCCGCGATTCCAGAGGCGCTGAACAGTCTCGGGGCCAGAACGC TCGACTACCTGAGGAGGATCCACGACGCGGCCTGCCAGGTCTGGCACCACTATCAGCGGGACGCTGAGGATTTCGACATC CTCTGGGAGCAGGCTCTGGCCAATACGGATGCCGCCGAGTGGGACCCCGAGGAGGGTCGGGAGGAGCTTGCGGCCCGGAT GGCGGAAGCGCTCGGCATCGACCGCCGTGCCGTGCGTTACGAAATGGACACAGTCCTGAGTGGCCACCCGCTCCCAAAAC GCGCCGACCACATGGCGGATCAGCCCGCTTCAGTACTGGGAATGGAGGGCGCTACCCCGGAGGAGAGCACCTCGGCAGAC GCTGGGGGGGGTAGAGAGATCGTCCCCCAAGGATAG
Upstream 100 bases:
>100_bases TTCAGCGCTCGAGACCATGCGAGCTCTTACGCAAGAGCTGTTCCCGCATCTCGACTCGGCCTAACCAGCAAGAGCGCAGC TCAGAGCGCCGGAGACGCAT
Downstream 100 bases:
>100_bases CGCCGACGCGCACGCGCCATCCTGGGGCGAGGAGGGGGGCGGGAGCCTGGAAGAGTCCACTCCGTTTGAGCCCGAAGCGG TGCTCAACCGGCCCAAGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MAKRGLTEKVRQGLWQGHYGNREQSLDRPGDPVTVTQMVLSIDQVVEYEDNPRRLENPRYEEIKQSIAAQRGLNNSLDVT RRPGDEHYITCAGGNTRLRILRELYAETGDEAFARIYCLYHPWQGETTVLTSHLVENELRGELALIDKALALEHLRRHLE SEVGERLSRNAFITRLHALGYTISKRQLLRYEFAAQHLLAAIPEALNSLGARTLDYLRRIHDAACQVWHHYQRDAEDFDI LWEQALANTDAAEWDPEEGREELAARMAEALGIDRRAVRYEMDTVLSGHPLPKRADHMADQPASVLGMEGATPEESTSAD AGGGREIVPQG
Sequences:
>Translated_331_residues MAKRGLTEKVRQGLWQGHYGNREQSLDRPGDPVTVTQMVLSIDQVVEYEDNPRRLENPRYEEIKQSIAAQRGLNNSLDVT RRPGDEHYITCAGGNTRLRILRELYAETGDEAFARIYCLYHPWQGETTVLTSHLVENELRGELALIDKALALEHLRRHLE SEVGERLSRNAFITRLHALGYTISKRQLLRYEFAAQHLLAAIPEALNSLGARTLDYLRRIHDAACQVWHHYQRDAEDFDI LWEQALANTDAAEWDPEEGREELAARMAEALGIDRRAVRYEMDTVLSGHPLPKRADHMADQPASVLGMEGATPEESTSAD AGGGREIVPQG >Mature_330_residues AKRGLTEKVRQGLWQGHYGNREQSLDRPGDPVTVTQMVLSIDQVVEYEDNPRRLENPRYEEIKQSIAAQRGLNNSLDVTR RPGDEHYITCAGGNTRLRILRELYAETGDEAFARIYCLYHPWQGETTVLTSHLVENELRGELALIDKALALEHLRRHLES EVGERLSRNAFITRLHALGYTISKRQLLRYEFAAQHLLAAIPEALNSLGARTLDYLRRIHDAACQVWHHYQRDAEDFDIL WEQALANTDAAEWDPEEGREELAARMAEALGIDRRAVRYEMDTVLSGHPLPKRADHMADQPASVLGMEGATPEESTSADA GGGREIVPQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37466; Mature: 37335
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRGLTEKVRQGLWQGHYGNREQSLDRPGDPVTVTQMVLSIDQVVEYEDNPRRLENPRY CCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH EEIKQSIAAQRGLNNSLDVTRRPGDEHYITCAGGNTRLRILRELYAETGDEAFARIYCLY HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHEEEEEE HPWQGETTVLTSHLVENELRGELALIDKALALEHLRRHLESEVGERLSRNAFITRLHALG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YTISKRQLLRYEFAAQHLLAAIPEALNSLGARTLDYLRRIHDAACQVWHHYQRDAEDFDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LWEQALANTDAAEWDPEEGREELAARMAEALGIDRRAVRYEMDTVLSGHPLPKRADHMAD HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHCC QPASVLGMEGATPEESTSADAGGGREIVPQG CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKRGLTEKVRQGLWQGHYGNREQSLDRPGDPVTVTQMVLSIDQVVEYEDNPRRLENPRY CCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH EEIKQSIAAQRGLNNSLDVTRRPGDEHYITCAGGNTRLRILRELYAETGDEAFARIYCLY HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHEEEEEE HPWQGETTVLTSHLVENELRGELALIDKALALEHLRRHLESEVGERLSRNAFITRLHALG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YTISKRQLLRYEFAAQHLLAAIPEALNSLGARTLDYLRRIHDAACQVWHHYQRDAEDFDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LWEQALANTDAAEWDPEEGREELAARMAEALGIDRRAVRYEMDTVLSGHPLPKRADHMAD HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHCC QPASVLGMEGATPEESTSADAGGGREIVPQG CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA