| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611031
Identifier: 121611031
GI number: 121611031
Start: 4514235
End: 4515245
Strand: Direct
Name: 121611031
Synonym: Veis_4115
Alternate gene names: NA
Gene position: 4514235-4515245 (Clockwise)
Preceding gene: 121611030
Following gene: 121611039
Centisome position: 81.09
GC content: 58.75
Gene sequence:
>1011_bases ATGATGCGCCTCAAGCGTCGTACATTCACATTCACGCAGACTGGCCTGGCCCTGCTCGGCCTGGCAGGCATTGCCTACAC TGCGCCGCTGATGGCCCAGACAAATTATCCTTCGCGCCCGGTCACGATCGTGGTGCCGCATCCCGCAGGCGGTTCGGTGG ACGGTGTTGCGCGCATATTTGCAGAAAAGCTGCGCGAAGAACTCAAGGAGTCTGTCGTTGTCGACAACCGTCCCGGCGCT TCGGGAATGATCGGTGCCGACACCGTCGCCCGCGCCGCGCCGGACGGTTACACACTGTACGTCAATGCGTCCATCCACTC GATCAATCCGCTTCTGTACAAGAAAAGCATCAAATTCGATGCAGTCAAGGACTTCACTGCCATCAGCCAGTTGGCCCAGG GCGCGCTTATTTTCAGCGTCAATCTCAAGGTGCCCGCCAGCACGGTGCAGGAACTGATCAAAGAGATCAAGGCATCACCC AAAGCATATAGCTTCGGCTCCACCGGTTTCGGCGCTGCGGGCCACTTGGGCACGGCCCAGTTTCTCCATGAGGCCGGACT TTCCTCGCTGCAAATTCCTGTCGTGCTGTACAAAGGCGCTGCGCCTGCGTTGCAGGACCTGATCGGCGGCCAGATATCGG CGCTGATGGACCCGATGCTGTCCTCCCTGCCGCTGGTGAAAACGGGAAAGCTCCGGGCACTGGCAGTCACCGGGCATGAG CGCAGTCCGCTGCTGCCGGATGTTCCCACCATGCGCGAGTCCCACCTCGGGGACTTCGAGTTTTATTCCTGGTACGGGCT GTGGGCTCCGGCCAATATTCCCGAGCCGGTGCGGATGAAACTCGAAGCCGCAGCCGCGAAAATCATGCAGTCGGCGGATA TGAAAAAATACCTGAACGAGCGCGGATTCGATCCGGCCTACAAAAACTCATCGGACTTTGCGAAGTACATCGGCGTCGAA ATGACCCGCTACCAGGCGATCATCGACAAAGCGAATATCACCATCGATTGA
Upstream 100 bases:
>100_bases AGAGTATTTTGATCGATGGCGGCGCGTACCCCGGAACCTACTGAAAAACGCCAGGCAAAAATCTTCAGCCCATTCGACCG CAGTTCATTCGGAAAGAAAC
Downstream 100 bases:
>100_bases GCAGCCCGCTGAAGGCCCTCGCTCCTGCCCTCGCCCTCGGTGCCGGCGTTGCACCGGCCGCCGGACGCTTGCAGTGACTG CCAGCAGTCAGCGGTTTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MMRLKRRTFTFTQTGLALLGLAGIAYTAPLMAQTNYPSRPVTIVVPHPAGGSVDGVARIFAEKLREELKESVVVDNRPGA SGMIGADTVARAAPDGYTLYVNASIHSINPLLYKKSIKFDAVKDFTAISQLAQGALIFSVNLKVPASTVQELIKEIKASP KAYSFGSTGFGAAGHLGTAQFLHEAGLSSLQIPVVLYKGAAPALQDLIGGQISALMDPMLSSLPLVKTGKLRALAVTGHE RSPLLPDVPTMRESHLGDFEFYSWYGLWAPANIPEPVRMKLEAAAAKIMQSADMKKYLNERGFDPAYKNSSDFAKYIGVE MTRYQAIIDKANITID
Sequences:
>Translated_336_residues MMRLKRRTFTFTQTGLALLGLAGIAYTAPLMAQTNYPSRPVTIVVPHPAGGSVDGVARIFAEKLREELKESVVVDNRPGA SGMIGADTVARAAPDGYTLYVNASIHSINPLLYKKSIKFDAVKDFTAISQLAQGALIFSVNLKVPASTVQELIKEIKASP KAYSFGSTGFGAAGHLGTAQFLHEAGLSSLQIPVVLYKGAAPALQDLIGGQISALMDPMLSSLPLVKTGKLRALAVTGHE RSPLLPDVPTMRESHLGDFEFYSWYGLWAPANIPEPVRMKLEAAAAKIMQSADMKKYLNERGFDPAYKNSSDFAKYIGVE MTRYQAIIDKANITID >Mature_336_residues MMRLKRRTFTFTQTGLALLGLAGIAYTAPLMAQTNYPSRPVTIVVPHPAGGSVDGVARIFAEKLREELKESVVVDNRPGA SGMIGADTVARAAPDGYTLYVNASIHSINPLLYKKSIKFDAVKDFTAISQLAQGALIFSVNLKVPASTVQELIKEIKASP KAYSFGSTGFGAAGHLGTAQFLHEAGLSSLQIPVVLYKGAAPALQDLIGGQISALMDPMLSSLPLVKTGKLRALAVTGHE RSPLLPDVPTMRESHLGDFEFYSWYGLWAPANIPEPVRMKLEAAAAKIMQSADMKKYLNERGFDPAYKNSSDFAKYIGVE MTRYQAIIDKANITID
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 36263; Mature: 36263
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLKRRTFTFTQTGLALLGLAGIAYTAPLMAQTNYPSRPVTIVVPHPAGGSVDGVARIF CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH AEKLREELKESVVVDNRPGASGMIGADTVARAAPDGYTLYVNASIHSINPLLYKKSIKFD HHHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCCCEEEEEECCHHHCCHHHHCCCCCHH AVKDFTAISQLAQGALIFSVNLKVPASTVQELIKEIKASPKAYSFGSTGFGAAGHLGTAQ HHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHH FLHEAGLSSLQIPVVLYKGAAPALQDLIGGQISALMDPMLSSLPLVKTGKLRALAVTGHE HHHHCCCCCEEEEEEEECCCCHHHHHHHCHHHHHHHHHHHHHCCCEECCCEEEEEEECCC RSPLLPDVPTMRESHLGDFEFYSWYGLWAPANIPEPVRMKLEAAAAKIMQSADMKKYLNE CCCCCCCCCCHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RGFDPAYKNSSDFAKYIGVEMTRYQAIIDKANITID CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEC >Mature Secondary Structure MMRLKRRTFTFTQTGLALLGLAGIAYTAPLMAQTNYPSRPVTIVVPHPAGGSVDGVARIF CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH AEKLREELKESVVVDNRPGASGMIGADTVARAAPDGYTLYVNASIHSINPLLYKKSIKFD HHHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCCCEEEEEECCHHHCCHHHHCCCCCHH AVKDFTAISQLAQGALIFSVNLKVPASTVQELIKEIKASPKAYSFGSTGFGAAGHLGTAQ HHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHH FLHEAGLSSLQIPVVLYKGAAPALQDLIGGQISALMDPMLSSLPLVKTGKLRALAVTGHE HHHHCCCCCEEEEEEEECCCCHHHHHHHCHHHHHHHHHHHHHCCCEECCCEEEEEEECCC RSPLLPDVPTMRESHLGDFEFYSWYGLWAPANIPEPVRMKLEAAAAKIMQSADMKKYLNE CCCCCCCCCCHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RGFDPAYKNSSDFAKYIGVEMTRYQAIIDKANITID CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]