| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121610397
Identifier: 121610397
GI number: 121610397
Start: 3837873
End: 3838499
Strand: Direct
Name: 121610397
Synonym: Veis_3465
Alternate gene names: NA
Gene position: 3837873-3838499 (Clockwise)
Preceding gene: 121610396
Following gene: 121610398
Centisome position: 68.94
GC content: 64.59
Gene sequence:
>627_bases TTGGCGGCCCTGTGCGGCGCGCTCTGGCTGCTGCCCTCGGCGGGCCATGCCCAGTCGGTCACCCTGGCCGGCATGCTCGG CAGCAAAGCCTTGCTGGTGGTGGATGCCAACCCGCCGCGTGCCGTGGGCGTGGGGGAGCAATACCAGGGGGTGAAAGTGA TCGCGACCACCAGGGAAGAGGCGACCGTCGAAATCCGGGGCGTGCGCAACACCCTGCGGCTGGGTGCGCCGGTGAGCGTC GGCGGGCGCAGCGGCAGCGGCAAGCGCATCACGCTGATCGCCGACAGCCGTGGCCATTTCGTGAACAGCGGCACCATCAA TGGGCAGGTGATGCAGTTCATGATAGATACCGGAGCCTCCACCGTCGCCGTCGGGCGCACGGACGCCGACCGGATGGGGC TGAAATACAAAAACGGCCAGCCGATGCGCATGAACACCGCCAATGGCATCGGCCAAGGCTGGTGGATGAAGCTCGACTCG GTGCGCATCGGTGATGTCGAGGTGTTTGACGTGGATGCGGTCATCACCGAGCAACCCATGCCCTATGTGCTGCTGGGCAA CAGCTTTCTGACCGAGTTTCAAATGACCCGCATCAACGACCGGTTGGTGCTGGAAAAACGCCAGTGA
Upstream 100 bases:
>100_bases TTCCGCGATTGAGCCGGCGCAGCGTCGTCCTCCCCCCCACCATCCATCGACCATGACCGAGCCACGGACATTGCGCCAGC AGCCAACCGCCCGGCGCGCC
Downstream 100 bases:
>100_bases GGGCCGCCATGTCTGCCTCCCCCAACACCGCCGGCAACCCGGACCCCGAGGGCGAGTACGAAGACCTGCTGGGCCTGTGG TCCGATCTGGAATCGGGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MAALCGALWLLPSAGHAQSVTLAGMLGSKALLVVDANPPRAVGVGEQYQGVKVIATTREEATVEIRGVRNTLRLGAPVSV GGRSGSGKRITLIADSRGHFVNSGTINGQVMQFMIDTGASTVAVGRTDADRMGLKYKNGQPMRMNTANGIGQGWWMKLDS VRIGDVEVFDVDAVITEQPMPYVLLGNSFLTEFQMTRINDRLVLEKRQ
Sequences:
>Translated_208_residues MAALCGALWLLPSAGHAQSVTLAGMLGSKALLVVDANPPRAVGVGEQYQGVKVIATTREEATVEIRGVRNTLRLGAPVSV GGRSGSGKRITLIADSRGHFVNSGTINGQVMQFMIDTGASTVAVGRTDADRMGLKYKNGQPMRMNTANGIGQGWWMKLDS VRIGDVEVFDVDAVITEQPMPYVLLGNSFLTEFQMTRINDRLVLEKRQ >Mature_207_residues AALCGALWLLPSAGHAQSVTLAGMLGSKALLVVDANPPRAVGVGEQYQGVKVIATTREEATVEIRGVRNTLRLGAPVSVG GRSGSGKRITLIADSRGHFVNSGTINGQVMQFMIDTGASTVAVGRTDADRMGLKYKNGQPMRMNTANGIGQGWWMKLDSV RIGDVEVFDVDAVITEQPMPYVLLGNSFLTEFQMTRINDRLVLEKRQ
Specific function: Unknown
COG id: COG3577
COG function: function code R; Predicted aspartyl protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22332; Mature: 22201
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALCGALWLLPSAGHAQSVTLAGMLGSKALLVVDANPPRAVGVGEQYQGVKVIATTREE CCCHHCCHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEECCCCCCCCEEEEEECCCC ATVEIRGVRNTLRLGAPVSVGGRSGSGKRITLIADSRGHFVNSGTINGQVMQFMIDTGAS EEEEEEECCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEEECCCC TVAVGRTDADRMGLKYKNGQPMRMNTANGIGQGWWMKLDSVRIGDVEVFDVDAVITEQPM EEEEECCCHHHCCEEECCCCCEEEECCCCCCCCEEEEECCEEECCEEEEEECEEEECCCC PYVLLGNSFLTEFQMTRINDRLVLEKRQ CEEEECCCHHCEEEEEECCCEEEEEECC >Mature Secondary Structure AALCGALWLLPSAGHAQSVTLAGMLGSKALLVVDANPPRAVGVGEQYQGVKVIATTREE CCHHCCHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEECCCCCCCCEEEEEECCCC ATVEIRGVRNTLRLGAPVSVGGRSGSGKRITLIADSRGHFVNSGTINGQVMQFMIDTGAS EEEEEEECCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEEECCCC TVAVGRTDADRMGLKYKNGQPMRMNTANGIGQGWWMKLDSVRIGDVEVFDVDAVITEQPM EEEEECCCHHHCCEEECCCCCEEEECCCCCCCCEEEEECCEEECCEEEEEECEEEECCCC PYVLLGNSFLTEFQMTRINDRLVLEKRQ CEEEECCCHHCEEEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA