| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is yajQ [C]
Identifier: 121610396
GI number: 121610396
Start: 3837299
End: 3837784
Strand: Direct
Name: yajQ [C]
Synonym: Veis_3464
Alternate gene names: 121610396
Gene position: 3837299-3837784 (Clockwise)
Preceding gene: 121610392
Following gene: 121610397
Centisome position: 68.93
GC content: 59.67
Gene sequence:
>486_bases ATGCCATCTTTTGACACTGTTTGCGAAGCCAACCTGGTTGACGTCAGGAACGCGGTCGAGAACACCGCCAAGGAAATCGC CACCCGTTTCGACTTCAAAGGCACTGCGGCCAGCATAACGATCCAGGAGCGCGAGATCACGCTCATCGGCGACGCCGACT TCCAACTCACCCAGATCGAAGACGTGCTGCGCAACAAGTTGACCAAGCGCAGCGTCGATGTGCGCTTTCTCGACATCGGC GAGGTGCGCAAGATCGGCGGCGACAAGGTCAAACAGTTGCTCAAGGTGCGCAGCGGCATCGAAAGCGAACTGGCCAGGAA GATCCAGAAGCTGCTCAAGGACAGCAAGCTCAAGGTCCAGGGCGCGATCCAGGAAGACAAGGTGCGCGTGACCGGCGCCA AGCGCGACGACTTGCAGGCCGCGATGGCCCTGATCCGCAAGGAGGTGACCGATGTGCCGCTGTCGTTCGACAACTTCCGC GATTGA
Upstream 100 bases:
>100_bases CCAAGGCTGCAAAGAGACGTTGTTCTCGACTACCATTGGCCCGATTGTCGCATTGGGCCGTCTGCGCCATGCCCCGTGTT TTCCGAGACCGAGAGCCACC
Downstream 100 bases:
>100_bases GCCGGCGCAGCGTCGTCCTCCCCCCCACCATCCATCGACCATGACCGAGCCACGGACATTGCGCCAGCAGCCAACCGCCC GGCGCGCCTTGGCGGCCCTG
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MPSFDTVCEANLVDVRNAVENTAKEIATRFDFKGTAASITIQEREITLIGDADFQLTQIEDVLRNKLTKRSVDVRFLDIG EVRKIGGDKVKQLLKVRSGIESELARKIQKLLKDSKLKVQGAIQEDKVRVTGAKRDDLQAAMALIRKEVTDVPLSFDNFR D
Sequences:
>Translated_161_residues MPSFDTVCEANLVDVRNAVENTAKEIATRFDFKGTAASITIQEREITLIGDADFQLTQIEDVLRNKLTKRSVDVRFLDIG EVRKIGGDKVKQLLKVRSGIESELARKIQKLLKDSKLKVQGAIQEDKVRVTGAKRDDLQAAMALIRKEVTDVPLSFDNFR D >Mature_160_residues PSFDTVCEANLVDVRNAVENTAKEIATRFDFKGTAASITIQEREITLIGDADFQLTQIEDVLRNKLTKRSVDVRFLDIGE VRKIGGDKVKQLLKVRSGIESELARKIQKLLKDSKLKVQGAIQEDKVRVTGAKRDDLQAAMALIRKEVTDVPLSFDNFRD
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family
Homologues:
Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=45.398773006135, Blast_Score=138, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3464_VEREI (A1WNH8)
Other databases:
- EMBL: CP000542 - RefSeq: YP_998203.1 - ProteinModelPortal: A1WNH8 - SMR: A1WNH8 - STRING: A1WNH8 - GeneID: 4692107 - GenomeReviews: CP000542_GR - KEGG: vei:Veis_3464 - eggNOG: COG1666 - HOGENOM: HBG290634 - OMA: LQFTNYR - PhylomeDB: A1WNH8 - ProtClustDB: PRK05412 - BioCyc: VEIS391735:VEIS_3464-MONOMER - HAMAP: MF_00632 - InterPro: IPR007551
Pfam domain/function: PF04461 DUF520
EC number: NA
Molecular weight: Translated: 18090; Mature: 17959
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFDTVCEANLVDVRNAVENTAKEIATRFDFKGTAASITIQEREITLIGDADFQLTQIE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCCHHHHHH DVLRNKLTKRSVDVRFLDIGEVRKIGGDKVKQLLKVRSGIESELARKIQKLLKDSKLKVQ HHHHHHHHHHCCCEEEECHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE GAIQEDKVRVTGAKRDDLQAAMALIRKEVTDVPLSFDNFRD CCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PSFDTVCEANLVDVRNAVENTAKEIATRFDFKGTAASITIQEREITLIGDADFQLTQIE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCCHHHHHH DVLRNKLTKRSVDVRFLDIGEVRKIGGDKVKQLLKVRSGIESELARKIQKLLKDSKLKVQ HHHHHHHHHHCCCEEEECHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE GAIQEDKVRVTGAKRDDLQAAMALIRKEVTDVPLSFDNFRD CCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA