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The map label for this gene is dgoR [H]

Identifier: 121610392

GI number: 121610392

Start: 3833311

End: 3834057

Strand: Direct

Name: dgoR [H]

Synonym: Veis_3460

Alternate gene names: 121610392

Gene position: 3833311-3834057 (Clockwise)

Preceding gene: 121610391

Following gene: 121610396

Centisome position: 68.86

GC content: 62.92

Gene sequence:

>747_bases
ATGGGACTGCACCAATCTGACCTCGGGTACCGTTGCCCACCGGAACGCAAAAGCAGGCATTCGCGCATCGTGCACGAACT
CGGCATTCGAATCGTGGCGGGGGACTACAAGCCCGGGGAGAAACTGCCGCAGGAGGCGCGGCTTTGCGCAACTTACTCGG
TCAGCAGGCCCGTCCTGCGCGAAGTCATGCGCGTGCTCGTCGCCAAGGGCCTGGTGATATCCCGGCAAGGCGCTGGCGCA
ATCGTCAGGGAGCGGATCGACTGGCACTTGCTCGATCCCGATGTCTTGTACTGGATGATCCAGTCCAGACCGGCGCAAGA
GTTCGTCGAGACGCTGATGACGATGCGGCGAATCTTTGAGCCGGCCACGGCGGCGCTTGCGGCAAAGGTAGCTTCCGCGC
AAGCGCTGGAGAAAATCGCACAGGCATTCGCCGGGATGGAAGCGGCCAGCACGCCCCAAGAGCTGCTCGAGCCCGACCTG
GCGTTCCACCGGAGCATCGCCCAGGCCACCGGCAACGACCTGGTCGCCTACATTGCAAACATGCTGTCGCTTGCGTTGAG
CGAGTCCATCAAACTCAGCAGCAAGCACCCGAACACACACGCATTGTCCCTGCCCCGCCACAAGGCGATTCTCACCGCGC
TGGTGAACCGTGACCCGCTCGCCGCGCGCCAAGCGACGCTTGTGCAACTCGACGAAACCCACGGTGACATTGCGCGCATC
CTCGATTCCGGCATCGATCTGGCGTAA

Upstream 100 bases:

>100_bases
CAGGCGCGCGGCGCATGGCTGCGCCGTCATCAAACCGGCCAGCGCGCACGCATGAATTCCGGCAGGATGGGCACGCCAAT
CTTTTCTTCGAGCCACCACC

Downstream 100 bases:

>100_bases
CGCAGCGACCCATTCGCCGCCACGGCACGGGTGCGCAAGCCCAAGGGCGCATCGAACATTGCGTCAACGAAGCCCATGGG
TTCGTCGGACGCCTCGATCG

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MGLHQSDLGYRCPPERKSRHSRIVHELGIRIVAGDYKPGEKLPQEARLCATYSVSRPVLREVMRVLVAKGLVISRQGAGA
IVRERIDWHLLDPDVLYWMIQSRPAQEFVETLMTMRRIFEPATAALAAKVASAQALEKIAQAFAGMEAASTPQELLEPDL
AFHRSIAQATGNDLVAYIANMLSLALSESIKLSSKHPNTHALSLPRHKAILTALVNRDPLAARQATLVQLDETHGDIARI
LDSGIDLA

Sequences:

>Translated_248_residues
MGLHQSDLGYRCPPERKSRHSRIVHELGIRIVAGDYKPGEKLPQEARLCATYSVSRPVLREVMRVLVAKGLVISRQGAGA
IVRERIDWHLLDPDVLYWMIQSRPAQEFVETLMTMRRIFEPATAALAAKVASAQALEKIAQAFAGMEAASTPQELLEPDL
AFHRSIAQATGNDLVAYIANMLSLALSESIKLSSKHPNTHALSLPRHKAILTALVNRDPLAARQATLVQLDETHGDIARI
LDSGIDLA
>Mature_247_residues
GLHQSDLGYRCPPERKSRHSRIVHELGIRIVAGDYKPGEKLPQEARLCATYSVSRPVLREVMRVLVAKGLVISRQGAGAI
VRERIDWHLLDPDVLYWMIQSRPAQEFVETLMTMRRIFEPATAALAAKVASAQALEKIAQAFAGMEAASTPQELLEPDLA
FHRSIAQATGNDLVAYIANMLSLALSESIKLSSKHPNTHALSLPRHKAILTALVNRDPLAARQATLVQLDETHGDIARIL
DSGIDLA

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=219, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI48994961, Length=207, Percent_Identity=28.0193236714976, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790032, Length=231, Percent_Identity=28.1385281385281, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786303, Length=211, Percent_Identity=27.4881516587678, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790780, Length=217, Percent_Identity=31.7972350230415, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789353, Length=205, Percent_Identity=28.2926829268293, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082208, Length=220, Percent_Identity=28.6363636363636, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27276; Mature: 27145

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLHQSDLGYRCPPERKSRHSRIVHELGIRIVAGDYKPGEKLPQEARLCATYSVSRPVLR
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHCHHHHHHHHHHHCCHHHHH
EVMRVLVAKGLVISRQGAGAIVRERIDWHLLDPDVLYWMIQSRPAQEFVETLMTMRRIFE
HHHHHHHHCCCEEECCCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
PATAALAAKVASAQALEKIAQAFAGMEAASTPQELLEPDLAFHRSIAQATGNDLVAYIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHH
MLSLALSESIKLSSKHPNTHALSLPRHKAILTALVNRDPLAARQATLVQLDETHGDIARI
HHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LDSGIDLA
HHCCCCCC
>Mature Secondary Structure 
GLHQSDLGYRCPPERKSRHSRIVHELGIRIVAGDYKPGEKLPQEARLCATYSVSRPVLR
CCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHCHHHHHHHHHHHCCHHHHH
EVMRVLVAKGLVISRQGAGAIVRERIDWHLLDPDVLYWMIQSRPAQEFVETLMTMRRIFE
HHHHHHHHCCCEEECCCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
PATAALAAKVASAQALEKIAQAFAGMEAASTPQELLEPDLAFHRSIAQATGNDLVAYIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHH
MLSLALSESIKLSSKHPNTHALSLPRHKAILTALVNRDPLAARQATLVQLDETHGDIARI
HHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LDSGIDLA
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]