| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609868
Identifier: 121609868
GI number: 121609868
Start: 3268474
End: 3269766
Strand: Direct
Name: 121609868
Synonym: Veis_2921
Alternate gene names: NA
Gene position: 3268474-3269766 (Clockwise)
Preceding gene: 121609867
Following gene: 121609869
Centisome position: 58.71
GC content: 67.52
Gene sequence:
>1293_bases ATGAGTTCCCGTTTGCTTTGCGCCACCTACTGGCGCGCCAGTTGGATCCGCTTTCGCGAGCCCGTCGCCGCATTCGCGCA ATGCCAGCCCCTGCTATTGGACAGCCACGACGGCGTGCAGGTGCGGGGCTTGCACTGGACGCCCCGCTCCAACCCCAGGC CCCGGGTGGCGGTGATCGCGGCCCATCCGCGGGTGGACTTCTCGCAGCACTATGCCTTTCCTGCGCTGCTGCGCGCCGGC TACGCTTGCGTCGGCGCCAACCTGCGCTCCATCAACAACGACCTGAACTGCGTGCACGAGCAGTTGCTCATCGACCTGGC GGCCTATGTCTGCTGGTTGCGCGACGCCTGCGGCGTGCAGCAGGTGGTCTGGCTCGGCAACTCGGGCGGCGCAACGCTCG GGTGCTTCTACCAGCAGCAGGCCAAGGCCAGGCCGTCCGATCGGCTGCGCCACACACCGGCCGGCCGGCCGGTGCCGTTG GCCGATGTCGTGATGCCGCCGTTCGACGCGATGATGATCACCGCCGCCCACACCGGACAGGGGCTGGTGCTCAACGAAAC CATCGACCCGTCGGTGGTCGACGAGCACAACCCGATGCTGACCGATCCGTCGCTGGACATGTACGACCCGGCCAACGGTT TCAGGCCCGCGCCGCAATGGACGCAATACGACGCCGGGTTTCTGCGGCGCTACCGCCAAAAGCAGCTCGAACGGGTGGCG CGGATCGACGCGCTGGCGCATGCGCTGATCGCCGAACGCAGCCGTGGCGAGAGCCTGTGCGATTGGCCGGGTTTCGAGCA GGCGCCGCTGCCGCTGCAGCGCGCCGCCATCGCGCAGGCGACCTTCACCCCGGTCATCGCAACCTACCGCACCATGGCCA ACCCGCACTATGTGGATATCGGCATCGACCCCAGCGGGCGCGGCTACGGCAGCTTGCTGAGCGACCGGCCCGACATCATG AACTTCCAGTTGCTCGGCTTTGGCCGGTTGCAAACGCCCGACGCCTGGTTGTCCACCTGGTCGGGCCTGAGCAGCAATGC CAGCATGGCCAAGACCGCCCCGGCCGTGACCGAGCCGGTGGTCGTCGTGCACGCCGGCCGCGACCTGGACGTGTATCCGC GCACCCACACGCAAACCATCATCGATGCGCTGGCCAGCAGCGACAAGAGCCTGCTGGAGTTTCCCCGCAGACTGCACTAC TTCGAGCCCGAAGGCGACGAGCCGCCCAATGCCGGCGCGCTCGAGCAGATGAACCAATTGCTACCCTGGCTGCAGGAGCG TTGCCCGCCATGA
Upstream 100 bases:
>100_bases GCTCTGCTCCGAGGGCGCAGCCTCGACCACCGGCGCCGTGCTGTCCATGGACTGCGGCTTTACTGCGGCATAGACGCGCA ATACCTTCCGAAGGCCCCGC
Downstream 100 bases:
>100_bases ACACCGAACCCCAAGCCCTGGACGCAGGCCCACCGTCCACGATGATGGACGACGATTTGTCGCTCAACCTGCTGCTGGAA CGGGCCGGCCAACTGTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MSSRLLCATYWRASWIRFREPVAAFAQCQPLLLDSHDGVQVRGLHWTPRSNPRPRVAVIAAHPRVDFSQHYAFPALLRAG YACVGANLRSINNDLNCVHEQLLIDLAAYVCWLRDACGVQQVVWLGNSGGATLGCFYQQQAKARPSDRLRHTPAGRPVPL ADVVMPPFDAMMITAAHTGQGLVLNETIDPSVVDEHNPMLTDPSLDMYDPANGFRPAPQWTQYDAGFLRRYRQKQLERVA RIDALAHALIAERSRGESLCDWPGFEQAPLPLQRAAIAQATFTPVIATYRTMANPHYVDIGIDPSGRGYGSLLSDRPDIM NFQLLGFGRLQTPDAWLSTWSGLSSNASMAKTAPAVTEPVVVVHAGRDLDVYPRTHTQTIIDALASSDKSLLEFPRRLHY FEPEGDEPPNAGALEQMNQLLPWLQERCPP
Sequences:
>Translated_430_residues MSSRLLCATYWRASWIRFREPVAAFAQCQPLLLDSHDGVQVRGLHWTPRSNPRPRVAVIAAHPRVDFSQHYAFPALLRAG YACVGANLRSINNDLNCVHEQLLIDLAAYVCWLRDACGVQQVVWLGNSGGATLGCFYQQQAKARPSDRLRHTPAGRPVPL ADVVMPPFDAMMITAAHTGQGLVLNETIDPSVVDEHNPMLTDPSLDMYDPANGFRPAPQWTQYDAGFLRRYRQKQLERVA RIDALAHALIAERSRGESLCDWPGFEQAPLPLQRAAIAQATFTPVIATYRTMANPHYVDIGIDPSGRGYGSLLSDRPDIM NFQLLGFGRLQTPDAWLSTWSGLSSNASMAKTAPAVTEPVVVVHAGRDLDVYPRTHTQTIIDALASSDKSLLEFPRRLHY FEPEGDEPPNAGALEQMNQLLPWLQERCPP >Mature_429_residues SSRLLCATYWRASWIRFREPVAAFAQCQPLLLDSHDGVQVRGLHWTPRSNPRPRVAVIAAHPRVDFSQHYAFPALLRAGY ACVGANLRSINNDLNCVHEQLLIDLAAYVCWLRDACGVQQVVWLGNSGGATLGCFYQQQAKARPSDRLRHTPAGRPVPLA DVVMPPFDAMMITAAHTGQGLVLNETIDPSVVDEHNPMLTDPSLDMYDPANGFRPAPQWTQYDAGFLRRYRQKQLERVAR IDALAHALIAERSRGESLCDWPGFEQAPLPLQRAAIAQATFTPVIATYRTMANPHYVDIGIDPSGRGYGSLLSDRPDIMN FQLLGFGRLQTPDAWLSTWSGLSSNASMAKTAPAVTEPVVVVHAGRDLDVYPRTHTQTIIDALASSDKSLLEFPRRLHYF EPEGDEPPNAGALEQMNQLLPWLQERCPP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47763; Mature: 47632
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRLLCATYWRASWIRFREPVAAFAQCQPLLLDSHDGVQVRGLHWTPRSNPRPRVAVIA CCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCCCCCCEEEEE AHPRVDFSQHYAFPALLRAGYACVGANLRSINNDLNCVHEQLLIDLAAYVCWLRDACGVQ ECCCCCHHHHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCE QVVWLGNSGGATLGCFYQQQAKARPSDRLRHTPAGRPVPLADVVMPPFDAMMITAAHTGQ EEEEECCCCCCEEEHEEHHHHCCCCHHHHCCCCCCCCCCHHHHHCCCCCEEEEEEEECCC GLVLNETIDPSVVDEHNPMLTDPSLDMYDPANGFRPAPQWTQYDAGFLRRYRQKQLERVA CEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RIDALAHALIAERSRGESLCDWPGFEQAPLPLQRAAIAQATFTPVIATYRTMANPHYVDI HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE GIDPSGRGYGSLLSDRPDIMNFQLLGFGRLQTPDAWLSTWSGLSSNASMAKTAPAVTEPV ECCCCCCCCCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCE VVVHAGRDLDVYPRTHTQTIIDALASSDKSLLEFPRRLHYFEPEGDEPPNAGALEQMNQL EEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH LPWLQERCPP HHHHHHHCCC >Mature Secondary Structure SSRLLCATYWRASWIRFREPVAAFAQCQPLLLDSHDGVQVRGLHWTPRSNPRPRVAVIA CCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCCCCCCEEEEE AHPRVDFSQHYAFPALLRAGYACVGANLRSINNDLNCVHEQLLIDLAAYVCWLRDACGVQ ECCCCCHHHHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCE QVVWLGNSGGATLGCFYQQQAKARPSDRLRHTPAGRPVPLADVVMPPFDAMMITAAHTGQ EEEEECCCCCCEEEHEEHHHHCCCCHHHHCCCCCCCCCCHHHHHCCCCCEEEEEEEECCC GLVLNETIDPSVVDEHNPMLTDPSLDMYDPANGFRPAPQWTQYDAGFLRRYRQKQLERVA CEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RIDALAHALIAERSRGESLCDWPGFEQAPLPLQRAAIAQATFTPVIATYRTMANPHYVDI HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE GIDPSGRGYGSLLSDRPDIMNFQLLGFGRLQTPDAWLSTWSGLSSNASMAKTAPAVTEPV ECCCCCCCCCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCE VVVHAGRDLDVYPRTHTQTIIDALASSDKSLLEFPRRLHYFEPEGDEPPNAGALEQMNQL EEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH LPWLQERCPP HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA