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The map label for this gene is srpC [H]

Identifier: 120613293

GI number: 120613293

Start: 5200719

End: 5202161

Strand: Direct

Name: srpC [H]

Synonym: Aave_4662

Alternate gene names: 120613293

Gene position: 5200719-5202161 (Clockwise)

Preceding gene: 120613292

Following gene: 120613294

Centisome position: 97.16

GC content: 76.44

Gene sequence:

>1443_bases
ATGATGCAGACCCTCTCCCACGGGCCCCGCCGCCTTCTCGGCGCGGCCGTCCTGTTCGCCCTGGCCGGCTGCGCGGCCAC
CGCGCCGCCGCCGCGCGTCGATGCCCCTGCGCCCGCCGGCTGGCAGGCCCCGCTGCCGCACCAGGGCCGCGTGGAAGATA
TCGCGCGCTGGTGGGAGCGCCTGGGCGATCCACTGCTCACCGACCTGATCGCCGCCGCGCAGGACGTGTCTCCGGACGTC
GCCCAGGCCCGCTCGCGCGTGGAACAGGCCCGGGCCACGCAGATGGCCGCACGCTCGGCGCTGCTGCCGGGCGTGGATGC
CCAGGGCAACGCGAGCCGGGGCACCAGCCAGCAGGCTGCGGGGCTGGCGACGACCGTGCAGGGCGTCGTGCAGGCCAGCT
GGGAGGTGGACGTCTTCGGCGGCAACGCCGCTGCCGCCGAGGCCGCGCGGCAGCGCCTGGCCGGCGCGCAGGCCCGGTGG
CACGAGGCCCGCGTGTCGGTGGCCGCGGAAGTCGCCACGCAGTACGACGCATGGCGGCAGTGCCTGCGGCTGGCGGACGT
GGCGCAATCCGATGCCCGCTCGCGCTCCGAGAGCGCGCGCCTCACGGAAGCCAGCGAACGCGCGGGCTTCACCGCGCCGG
CCACGCTGGCGCTCGCCCAGGCCAGCGGGGCCGAGGGCCGGGTGCGCGCCGAGCAGCAGCGCATGGCCTGCGACATCGAT
CTGAAGGGCCTGGTGGCGCTCACGGGCCTGCCGGAGCCGGAACTCCGCGCCCGCGCGGCGGCGGCACCGGCGCCGCAGGC
CCTGCCGGATTCGCTGTTCGCCATCGATACGCTGCCGGCCCGCGTGCTGGCCCAGCGGCCCGACGTGTATGCCGCCGAGC
GCGAGGTGGCCGCGGCCAGTGCCGACGTGGGCAACGCGCGCGCCCAGCGCTTTCCGCGCCTGACGCTCGCCGGTTCCGTC
GGCCGCGCCTGGGGCAGCACGGGCGGCACGAGCGTGGCGACGAACACCTGGTCGATCGGGCCCGTCGGGGTGAGCCTGCC
GATCTTCGACGCGGGTCGCCGTGCCGCCCAGGTGGATGCGGCAAAAGCCCGCTACCAGGAGGCCGCGCAGCTCTACCGCG
CGAACGTGCGCCGTGCGGTGAGCGAGGTCGAGCAGGCCCTGGTGCGGCTCGCGAGCACGGCCGCGCGCAGTGCCGATGCC
GAACGCGCCGCCGCGGGCTACCGCGCCTCCTTCGTCGCGACCGAAGCGCGCTGGCGCAGCGGCCTCGCGAGCCTGCTGGA
GCTGGAGGAAACGCGCCGCACCGCCCTCAATTCCGAGACCGCGCTCATCTCGCTGCGCCAGGAGCGCATGGCGGCATGGA
TCGGCCTCTACCGCGCCGCGGGCGGCGGATGGGAAGGACCCGCGCAGGCATCCACACCCGTACCCGCCTCCGCCGCGCCC
TGA

Upstream 100 bases:

>100_bases
TGATCGCGGCCGAAAAAGCCTGGCGGCAAGCCACTGCGGCCCCTGCGGCCCGGGCCCCTGCCGCTTCCCGTTCACCGGCC
CGCCGGAAGACGCCGAAACC

Downstream 100 bases:

>100_bases
CGGCCCGCCCCGCATCCCCGACACACCGACCGCAACTTCCGGACCCTTTTCCATGCTGCGACTGCGTTCACGCCCCTCCC
TGCTGGCCCTGTCGGCCGCC

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MMQTLSHGPRRLLGAAVLFALAGCAATAPPPRVDAPAPAGWQAPLPHQGRVEDIARWWERLGDPLLTDLIAAAQDVSPDV
AQARSRVEQARATQMAARSALLPGVDAQGNASRGTSQQAAGLATTVQGVVQASWEVDVFGGNAAAAEAARQRLAGAQARW
HEARVSVAAEVATQYDAWRQCLRLADVAQSDARSRSESARLTEASERAGFTAPATLALAQASGAEGRVRAEQQRMACDID
LKGLVALTGLPEPELRARAAAAPAPQALPDSLFAIDTLPARVLAQRPDVYAAEREVAAASADVGNARAQRFPRLTLAGSV
GRAWGSTGGTSVATNTWSIGPVGVSLPIFDAGRRAAQVDAAKARYQEAAQLYRANVRRAVSEVEQALVRLASTAARSADA
ERAAAGYRASFVATEARWRSGLASLLELEETRRTALNSETALISLRQERMAAWIGLYRAAGGGWEGPAQASTPVPASAAP

Sequences:

>Translated_480_residues
MMQTLSHGPRRLLGAAVLFALAGCAATAPPPRVDAPAPAGWQAPLPHQGRVEDIARWWERLGDPLLTDLIAAAQDVSPDV
AQARSRVEQARATQMAARSALLPGVDAQGNASRGTSQQAAGLATTVQGVVQASWEVDVFGGNAAAAEAARQRLAGAQARW
HEARVSVAAEVATQYDAWRQCLRLADVAQSDARSRSESARLTEASERAGFTAPATLALAQASGAEGRVRAEQQRMACDID
LKGLVALTGLPEPELRARAAAAPAPQALPDSLFAIDTLPARVLAQRPDVYAAEREVAAASADVGNARAQRFPRLTLAGSV
GRAWGSTGGTSVATNTWSIGPVGVSLPIFDAGRRAAQVDAAKARYQEAAQLYRANVRRAVSEVEQALVRLASTAARSADA
ERAAAGYRASFVATEARWRSGLASLLELEETRRTALNSETALISLRQERMAAWIGLYRAAGGGWEGPAQASTPVPASAAP
>Mature_480_residues
MMQTLSHGPRRLLGAAVLFALAGCAATAPPPRVDAPAPAGWQAPLPHQGRVEDIARWWERLGDPLLTDLIAAAQDVSPDV
AQARSRVEQARATQMAARSALLPGVDAQGNASRGTSQQAAGLATTVQGVVQASWEVDVFGGNAAAAEAARQRLAGAQARW
HEARVSVAAEVATQYDAWRQCLRLADVAQSDARSRSESARLTEASERAGFTAPATLALAQASGAEGRVRAEQQRMACDID
LKGLVALTGLPEPELRARAAAAPAPQALPDSLFAIDTLPARVLAQRPDVYAAEREVAAASADVGNARAQRFPRLTLAGSV
GRAWGSTGGTSVATNTWSIGPVGVSLPIFDAGRRAAQVDAAKARYQEAAQLYRANVRRAVSEVEQALVRLASTAARSADA
ERAAAGYRASFVATEARWRSGLASLLELEETRRTALNSETALISLRQERMAAWIGLYRAAGGGWEGPAQASTPVPASAAP

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=472, Percent_Identity=26.271186440678, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI2367348, Length=492, Percent_Identity=27.0325203252033, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50245; Mature: 50245

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTLSHGPRRLLGAAVLFALAGCAATAPPPRVDAPAPAGWQAPLPHQGRVEDIARWWER
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LGDPLLTDLIAAAQDVSPDVAQARSRVEQARATQMAARSALLPGVDAQGNASRGTSQQAA
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GLATTVQGVVQASWEVDVFGGNAAAAEAARQRLAGAQARWHEARVSVAAEVATQYDAWRQ
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLRLADVAQSDARSRSESARLTEASERAGFTAPATLALAQASGAEGRVRAEQQRMACDID
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCC
LKGLVALTGLPEPELRARAAAAPAPQALPDSLFAIDTLPARVLAQRPDVYAAEREVAAAS
CCCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ADVGNARAQRFPRLTLAGSVGRAWGSTGGTSVATNTWSIGPVGVSLPIFDAGRRAAQVDA
CCCCCHHHHHCCCEEEECCHHHHCCCCCCCCEECCCCCCCCCCEECCCHHCCCHHHHHHH
AKARYQEAAQLYRANVRRAVSEVEQALVRLASTAARSADAERAAAGYRASFVATEARWRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHH
GLASLLELEETRRTALNSETALISLRQERMAAWIGLYRAAGGGWEGPAQASTPVPASAAP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMQTLSHGPRRLLGAAVLFALAGCAATAPPPRVDAPAPAGWQAPLPHQGRVEDIARWWER
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LGDPLLTDLIAAAQDVSPDVAQARSRVEQARATQMAARSALLPGVDAQGNASRGTSQQAA
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GLATTVQGVVQASWEVDVFGGNAAAAEAARQRLAGAQARWHEARVSVAAEVATQYDAWRQ
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLRLADVAQSDARSRSESARLTEASERAGFTAPATLALAQASGAEGRVRAEQQRMACDID
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCC
LKGLVALTGLPEPELRARAAAAPAPQALPDSLFAIDTLPARVLAQRPDVYAAEREVAAAS
CCCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ADVGNARAQRFPRLTLAGSVGRAWGSTGGTSVATNTWSIGPVGVSLPIFDAGRRAAQVDA
CCCCCHHHHHCCCEEEECCHHHHCCCCCCCCEECCCCCCCCCCEECCCHHCCCHHHHHHH
AKARYQEAAQLYRANVRRAVSEVEQALVRLASTAARSADAERAAAGYRASFVATEARWRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHH
GLASLLELEETRRTALNSETALISLRQERMAAWIGLYRAAGGGWEGPAQASTPVPASAAP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]