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The map label for this gene is ybiH [C]

Identifier: 120613292

GI number: 120613292

Start: 5199961

End: 5200722

Strand: Direct

Name: ybiH [C]

Synonym: Aave_4661

Alternate gene names: 120613292

Gene position: 5199961-5200722 (Clockwise)

Preceding gene: 120613291

Following gene: 120613293

Centisome position: 97.15

GC content: 70.87

Gene sequence:

>762_bases
ATGCCCGCACGACGCCCACGTTCCGCCGAGGCTCCCCCTCCGGCATCGTCTCCAGCCCCGACGGGAGAGGAGCAGGCATC
CCCGCGGGCGCGCCTGCTGTCCGCCGCCCTGCGTCTGTTTTCCGAGCAGGGCTACACCAAGACCTCGGTCCGGGCCATTG
CCGCGGCGGCGCAGGCCAACGTGGCGGCCGTGAGCTACTACTTCGGCGACAAGGCATCGCTCTACAGTGCCGTTTTCACC
GAGCCCACGTGGGACCACGCATCGCTGCGCTGCGCCTTCGCCCAGCCCGGCATCACGATGGAAGAGGCGCTGCGGCGCTA
CTTCCACGCGGCGCTCGCCCCCCTTGCCCATGGCGAACTGGCCCGCCAGAGCGTGCGGCTGCACATCCGCGAAATGCTCG
AACCGACGGGGCAGTGGGAACGCGCGCTCGACCAGGACGTGCGCCAGCCCCATGACGCGCTCGTGCGACTGCTCTGCCGC
CACATGGGGGTCGCCACCGCCGACCTCGCCGTCCACCGGCTGGCGCTGACCCTCTCCAGCATGGCGTTCCAGCTCTGGGG
CCATCGCGACGACATCGAGGCCCTCAAGCCCGAACTGCTGGCCACGGCCGAGGCCGTGGAACTCTGGGCCGACCGCATGG
TGGACTATGCGCTGGCCATGATCGCGGCCGAAAAAGCCTGGCGGCAAGCCACTGCGGCCCCTGCGGCCCGGGCCCCTGCC
GCTTCCCGTTCACCGGCCCGCCGGAAGACGCCGAAACCATGA

Upstream 100 bases:

>100_bases
CTGAACGGCACCCACGGTCCAGCCGATACGGCGGGACGCCGGTCGGAGCACCCAATCAATTCAAACAAACGTTTGATTGA
ATGTGGTGTAATCCGCGGCC

Downstream 100 bases:

>100_bases
TGCAGACCCTCTCCCACGGGCCCCGCCGCCTTCTCGGCGCGGCCGTCCTGTTCGCCCTGGCCGGCTGCGCGGCCACCGCG
CCGCCGCCGCGCGTCGATGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPARRPRSAEAPPPASSPAPTGEEQASPRARLLSAALRLFSEQGYTKTSVRAIAAAAQANVAAVSYYFGDKASLYSAVFT
EPTWDHASLRCAFAQPGITMEEALRRYFHAALAPLAHGELARQSVRLHIREMLEPTGQWERALDQDVRQPHDALVRLLCR
HMGVATADLAVHRLALTLSSMAFQLWGHRDDIEALKPELLATAEAVELWADRMVDYALAMIAAEKAWRQATAAPAARAPA
ASRSPARRKTPKP

Sequences:

>Translated_253_residues
MPARRPRSAEAPPPASSPAPTGEEQASPRARLLSAALRLFSEQGYTKTSVRAIAAAAQANVAAVSYYFGDKASLYSAVFT
EPTWDHASLRCAFAQPGITMEEALRRYFHAALAPLAHGELARQSVRLHIREMLEPTGQWERALDQDVRQPHDALVRLLCR
HMGVATADLAVHRLALTLSSMAFQLWGHRDDIEALKPELLATAEAVELWADRMVDYALAMIAAEKAWRQATAAPAARAPA
ASRSPARRKTPKP
>Mature_252_residues
PARRPRSAEAPPPASSPAPTGEEQASPRARLLSAALRLFSEQGYTKTSVRAIAAAAQANVAAVSYYFGDKASLYSAVFTE
PTWDHASLRCAFAQPGITMEEALRRYFHAALAPLAHGELARQSVRLHIREMLEPTGQWERALDQDVRQPHDALVRLLCRH
MGVATADLAVHRLALTLSSMAFQLWGHRDDIEALKPELLATAEAVELWADRMVDYALAMIAAEKAWRQATAAPAARAPAA
SRSPARRKTPKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27664; Mature: 27533

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARRPRSAEAPPPASSPAPTGEEQASPRARLLSAALRLFSEQGYTKTSVRAIAAAAQAN
CCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VAAVSYYFGDKASLYSAVFTEPTWDHASLRCAFAQPGITMEEALRRYFHAALAPLAHGEL
HHHHHHHHCCHHHHHHHHHCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARQSVRLHIREMLEPTGQWERALDQDVRQPHDALVRLLCRHMGVATADLAVHRLALTLSS
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MAFQLWGHRDDIEALKPELLATAEAVELWADRMVDYALAMIAAEKAWRQATAAPAARAPA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
ASRSPARRKTPKP
CCCCCCCCCCCCC
>Mature Secondary Structure 
PARRPRSAEAPPPASSPAPTGEEQASPRARLLSAALRLFSEQGYTKTSVRAIAAAAQAN
CCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VAAVSYYFGDKASLYSAVFTEPTWDHASLRCAFAQPGITMEEALRRYFHAALAPLAHGEL
HHHHHHHHCCHHHHHHHHHCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARQSVRLHIREMLEPTGQWERALDQDVRQPHDALVRLLCRHMGVATADLAVHRLALTLSS
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MAFQLWGHRDDIEALKPELLATAEAVELWADRMVDYALAMIAAEKAWRQATAAPAARAPA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
ASRSPARRKTPKP
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA