Click here to switch to the map view.

The map label for this gene is ydcO [H]

Identifier: 120613173

GI number: 120613173

Start: 5054798

End: 5055985

Strand: Reverse

Name: ydcO [H]

Synonym: Aave_4540

Alternate gene names: 120613173

Gene position: 5055985-5054798 (Counterclockwise)

Preceding gene: 120613174

Following gene: 120613172

Centisome position: 94.46

GC content: 69.02

Gene sequence:

>1188_bases
ATGCGCTCCTTTCTCAGAGATATCAGCCTCTCCGCCGCCGCGGCGGGATTCGTCGCGGTACTGGTGGGATTCACCAGTTC
GGTCACCCTGGTCTTTCAGGCGGCCCAGGCCTTCGGCGCCACGCCCGCCCAGATCACTTCCTGGATGTGGGCCCTCGGGC
TTGGCATGGGGCTGTGCTCCCTGGTTCCTTCGCTGCTGCTGCGCCAGCCCGTGATGGTGGCCTGGTCCACGCCCGGTGCC
GCGGTGCTGGCGTCGGCGGGCCTGGCCGGCGGATATTCCATGGGGGAGGCCGTGGGCGCCTTCATGCTGTGCGCCGTACT
GATCGCCCTGGCGGGGGCCACCGGCTGGTTCGAGCGAGCCATGCATCGCATCCCGGCGGAAATCGCCTCTGCACTGCTGG
CCGGCGTCCTGGCCCGGTTCGGCATGCAGGCTTTCGCGGCCGCCCAGACCGCACTGCCGCTGATCCTGCTGATGCTCATT
ACCTACCTCGTCGCGCGCCGCCTGCTGCCGCGCTACGCCATCGTGGTCACTCTGGCGGCTGCCATCGCGTTCACGGCCGC
ACAAGGCCAGATATCCCTGGCGGCCGTGCACCTCGCCTGGGCGGTGCCGGTGTTCACGGCCCCGGCATTCAGTGTGTCCG
CAGCCGTCGGGCTGGCGTTGCCGCTCTTCGTGGTGACGATGGCATCGCAGAATCTTCCGGGGGTGGCCGTCATCCGGGCT
TCCGGCTACCCGTTGCCGGTGTCCCGCCTCCTGACGATGACCGGGCTGGCCACCCTGGCGCTGGCGCCTTTCGGCGCCTA
CGCCTTGAACTTCAGCGCCATCACCGCCGCCATGTGCATGGGCCCCGAGGCGCACGAGGACCGGTCGCGCCGCTACACCG
CTGCCGTAGCCTGCGGTGCGCTGTACGTCGTCATCGGTCTGTTCGGTGCTGTGGTCACCGGGCTGCTGTCCGCTTTCCCG
CGCGAGCTGGTGGTTGCCATCGCCGGTCTGGCACTGCTCGGAACCATCGGTTCCGGCCTGTCCACCGCGTTGCGCGACGA
CGCACACCGTGAAGCTGCGCTCATCACCTTCCTTGTCACCTTGAGCGGTGTCGTGATCGCCGGTGTCGGCTCCGCCTTCT
GGGGCGTGGTCGCCGGCGTGCTCACGCTATTTGTGCAACAGTACGGACGCCGCCCCCGCGGCGCCTGA

Upstream 100 bases:

>100_bases
CGAGATCTGAAAGTACAGGAAGGGGCAGCCCCGGGCAGCCCGGGGCCATCCTCATGGAGCAGGATGGACGCCCGTGCAGA
GTGACAGAATCCTGCCCCTC

Downstream 100 bases:

>100_bases
CGCCACCTTCCCAGCCAGACGAGACCATGAACATTCTTTTCGTTGCCGATCCGGTCGAACACTTCAAGATCTACAAGGAC
ACCACGTTCTCGATGATGCG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRSFLRDISLSAAAAGFVAVLVGFTSSVTLVFQAAQAFGATPAQITSWMWALGLGMGLCSLVPSLLLRQPVMVAWSTPGA
AVLASAGLAGGYSMGEAVGAFMLCAVLIALAGATGWFERAMHRIPAEIASALLAGVLARFGMQAFAAAQTALPLILLMLI
TYLVARRLLPRYAIVVTLAAAIAFTAAQGQISLAAVHLAWAVPVFTAPAFSVSAAVGLALPLFVVTMASQNLPGVAVIRA
SGYPLPVSRLLTMTGLATLALAPFGAYALNFSAITAAMCMGPEAHEDRSRRYTAAVACGALYVVIGLFGAVVTGLLSAFP
RELVVAIAGLALLGTIGSGLSTALRDDAHREAALITFLVTLSGVVIAGVGSAFWGVVAGVLTLFVQQYGRRPRGA

Sequences:

>Translated_395_residues
MRSFLRDISLSAAAAGFVAVLVGFTSSVTLVFQAAQAFGATPAQITSWMWALGLGMGLCSLVPSLLLRQPVMVAWSTPGA
AVLASAGLAGGYSMGEAVGAFMLCAVLIALAGATGWFERAMHRIPAEIASALLAGVLARFGMQAFAAAQTALPLILLMLI
TYLVARRLLPRYAIVVTLAAAIAFTAAQGQISLAAVHLAWAVPVFTAPAFSVSAAVGLALPLFVVTMASQNLPGVAVIRA
SGYPLPVSRLLTMTGLATLALAPFGAYALNFSAITAAMCMGPEAHEDRSRRYTAAVACGALYVVIGLFGAVVTGLLSAFP
RELVVAIAGLALLGTIGSGLSTALRDDAHREAALITFLVTLSGVVIAGVGSAFWGVVAGVLTLFVQQYGRRPRGA
>Mature_395_residues
MRSFLRDISLSAAAAGFVAVLVGFTSSVTLVFQAAQAFGATPAQITSWMWALGLGMGLCSLVPSLLLRQPVMVAWSTPGA
AVLASAGLAGGYSMGEAVGAFMLCAVLIALAGATGWFERAMHRIPAEIASALLAGVLARFGMQAFAAAQTALPLILLMLI
TYLVARRLLPRYAIVVTLAAAIAFTAAQGQISLAAVHLAWAVPVFTAPAFSVSAAVGLALPLFVVTMASQNLPGVAVIRA
SGYPLPVSRLLTMTGLATLALAPFGAYALNFSAITAAMCMGPEAHEDRSRRYTAAVACGALYVVIGLFGAVVTGLLSAFP
RELVVAIAGLALLGTIGSGLSTALRDDAHREAALITFLVTLSGVVIAGVGSAFWGVVAGVLTLFVQQYGRRPRGA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=365, Percent_Identity=47.1232876712329, Blast_Score=319, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40410; Mature: 40410

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFLRDISLSAAAAGFVAVLVGFTSSVTLVFQAAQAFGATPAQITSWMWALGLGMGLCS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LVPSLLLRQPVMVAWSTPGAAVLASAGLAGGYSMGEAVGAFMLCAVLIALAGATGWFERA
HHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MHRIPAEIASALLAGVLARFGMQAFAAAQTALPLILLMLITYLVARRLLPRYAIVVTLAA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAFTAAQGQISLAAVHLAWAVPVFTAPAFSVSAAVGLALPLFVVTMASQNLPGVAVIRA
HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SGYPLPVSRLLTMTGLATLALAPFGAYALNFSAITAAMCMGPEAHEDRSRRYTAAVACGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LYVVIGLFGAVVTGLLSAFPRELVVAIAGLALLGTIGSGLSTALRDDAHREAALITFLVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGVVIAGVGSAFWGVVAGVLTLFVQQYGRRPRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSFLRDISLSAAAAGFVAVLVGFTSSVTLVFQAAQAFGATPAQITSWMWALGLGMGLCS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LVPSLLLRQPVMVAWSTPGAAVLASAGLAGGYSMGEAVGAFMLCAVLIALAGATGWFERA
HHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MHRIPAEIASALLAGVLARFGMQAFAAAQTALPLILLMLITYLVARRLLPRYAIVVTLAA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAFTAAQGQISLAAVHLAWAVPVFTAPAFSVSAAVGLALPLFVVTMASQNLPGVAVIRA
HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SGYPLPVSRLLTMTGLATLALAPFGAYALNFSAITAAMCMGPEAHEDRSRRYTAAVACGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LYVVIGLFGAVVTGLLSAFPRELVVAIAGLALLGTIGSGLSTALRDDAHREAALITFLVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGVVIAGVGSAFWGVVAGVLTLFVQQYGRRPRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]