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The map label for this gene is ylbK [H]

Identifier: 120610764

GI number: 120610764

Start: 2289719

End: 2290759

Strand: Reverse

Name: ylbK [H]

Synonym: Aave_2086

Alternate gene names: 120610764

Gene position: 2290759-2289719 (Counterclockwise)

Preceding gene: 120610765

Following gene: 120610763

Centisome position: 42.8

GC content: 73.1

Gene sequence:

>1041_bases
ATGCGATCGAACGCCCTGTTGCGCCCCCTGGTCCTCCTGAGTGCTGCGGCTCTGGCCGCCTGCGGCAGCGCGCCGCCTGC
CGCCCCTTCCGCCGCGCCCGCCCAGGCCGCTGCCGCTCCGTCGCCGGCCCCCATCAAGGTGGGCATCGCGCTGGGCGGCG
GTGCGGCCAAGGGTTTCGCGCACATCGGCGTCATCAAGATGCTGGAGGCCAACGGCCTGGCACCCGCCGTGGTGGCCGGC
ACCAGCGCGGGCAGCGTGGTGGGCGCGCTGTATGCGAGCGGCATGAACGCCTTCGAGCTGCAAGAAAAGGCCGTGGCGCT
CGACGAGGCGAAGATCCGCGACCTGCAGCTGTCCTCCGGCGGACTCGTGCTCGGCCAGAAACTCGAAGACTATGTGAACG
CGCAGGTCCGCAACCGGCCCATCGAGCAGCTGGCCAAGCCCTTCGCCGCCGTGGCCACGCGGCTGGAGGACGGCGAGCGG
ACGGTGTTCACGCGCGGCAATACCGGGCAGGCGGTGCGCGCTTCCAGCAGCATACCGGGCGTCTTCCAGCCCGTGGCGGC
CGGCAAATACCATTTCGTGGACGGCGGCGTGGTCAGTCCGGTGCCGGTGGACGCGGCGCGCCAGCTGGGGGCCGACATCG
TGGTCGCCGTGGACATCTCCAACAAGGCGCGCGGCCAGGCGCCCGCCGACATGCTGGGCACCCTGGGCCAGTCGATCGCG
ATCATGGGCCAGAAGCTCGGCCAGGCCGAACTCGCGCGGGCCGACGTGGTCGTGCGCCCGCAGGTGCTGGACATCGGCGC
GGCCGACTTCACGCAGCGCGCCGGCGCCATCCTGGAGGGCGAGAAAGCCGCCCTCGCCGCCATGCCGCAGATCCGCGAGC
GCGTGGCGCAGCTGCAGGCAGCGCGCGCCGAGGCCACGCGGCTCGCGCAACAGAAAGCCGCCGAGGCGCAGCACCAGGCC
TGCCTGGAGCAGCGCTCGCGCCTGCAGAAGCTCGCGGGGCTGGCGGGGTTGGACGGCTCCTGCCCCGCCGCGGCCCCCTG
A

Upstream 100 bases:

>100_bases
CTGACCAGTGGGGCCGAGCGCCGGCCACGCGACCCCACGCGCGCAAGGCGGGCGGCAGCCCGATAAACTGGCCGCTTCCC
CACAGTGTCTCCCTGCCGGC

Downstream 100 bases:

>100_bases
CGCCGACATTTGCGCCCGCCTCCTACGGCGGCCCCATCGGCGCGCACGTATGGTGCCGCCATGTCCCCCGGCAGCGATAT
CCCCGCCCGTCTCGATCGGC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRSNALLRPLVLLSAAALAACGSAPPAAPSAAPAQAAAAPSPAPIKVGIALGGGAAKGFAHIGVIKMLEANGLAPAVVAG
TSAGSVVGALYASGMNAFELQEKAVALDEAKIRDLQLSSGGLVLGQKLEDYVNAQVRNRPIEQLAKPFAAVATRLEDGER
TVFTRGNTGQAVRASSSIPGVFQPVAAGKYHFVDGGVVSPVPVDAARQLGADIVVAVDISNKARGQAPADMLGTLGQSIA
IMGQKLGQAELARADVVVRPQVLDIGAADFTQRAGAILEGEKAALAAMPQIRERVAQLQAARAEATRLAQQKAAEAQHQA
CLEQRSRLQKLAGLAGLDGSCPAAAP

Sequences:

>Translated_346_residues
MRSNALLRPLVLLSAAALAACGSAPPAAPSAAPAQAAAAPSPAPIKVGIALGGGAAKGFAHIGVIKMLEANGLAPAVVAG
TSAGSVVGALYASGMNAFELQEKAVALDEAKIRDLQLSSGGLVLGQKLEDYVNAQVRNRPIEQLAKPFAAVATRLEDGER
TVFTRGNTGQAVRASSSIPGVFQPVAAGKYHFVDGGVVSPVPVDAARQLGADIVVAVDISNKARGQAPADMLGTLGQSIA
IMGQKLGQAELARADVVVRPQVLDIGAADFTQRAGAILEGEKAALAAMPQIRERVAQLQAARAEATRLAQQKAAEAQHQA
CLEQRSRLQKLAGLAGLDGSCPAAAP
>Mature_346_residues
MRSNALLRPLVLLSAAALAACGSAPPAAPSAAPAQAAAAPSPAPIKVGIALGGGAAKGFAHIGVIKMLEANGLAPAVVAG
TSAGSVVGALYASGMNAFELQEKAVALDEAKIRDLQLSSGGLVLGQKLEDYVNAQVRNRPIEQLAKPFAAVATRLEDGER
TVFTRGNTGQAVRASSSIPGVFQPVAAGKYHFVDGGVVSPVPVDAARQLGADIVVAVDISNKARGQAPADMLGTLGQSIA
IMGQKLGQAELARADVVVRPQVLDIGAADFTQRAGAILEGEKAALAAMPQIRERVAQLQAARAEATRLAQQKAAEAQHQA
CLEQRSRLQKLAGLAGLDGSCPAAAP

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=202, Percent_Identity=31.1881188118812, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI260656037, Length=202, Percent_Identity=31.1881188118812, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI260656041, Length=202, Percent_Identity=31.1881188118812, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI116256487, Length=202, Percent_Identity=31.1881188118812, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI260656039, Length=202, Percent_Identity=31.1881188118812, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=30.9782608695652, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=30.9782608695652, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI226510936, Length=182, Percent_Identity=43.956043956044, Blast_Score=147, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=181, Percent_Identity=27.0718232044199, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571388, Length=184, Percent_Identity=28.2608695652174, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=28.804347826087, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 35039; Mature: 35039

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSNALLRPLVLLSAAALAACGSAPPAAPSAAPAQAAAAPSPAPIKVGIALGGGAAKGFA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHH
HIGVIKMLEANGLAPAVVAGTSAGSVVGALYASGMNAFELQEKAVALDEAKIRDLQLSSG
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCC
GLVLGQKLEDYVNAQVRNRPIEQLAKPFAAVATRLEDGERTVFTRGNTGQAVRASSSIPG
CEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC
VFQPVAAGKYHFVDGGVVSPVPVDAARQLGADIVVAVDISNKARGQAPADMLGTLGQSIA
CHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
IMGQKLGQAELARADVVVRPQVLDIGAADFTQRAGAILEGEKAALAAMPQIRERVAQLQA
HHHHHCCHHHHHHCCEEECCCEEECCCHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHH
ARAEATRLAQQKAAEAQHQACLEQRSRLQKLAGLAGLDGSCPAAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRSNALLRPLVLLSAAALAACGSAPPAAPSAAPAQAAAAPSPAPIKVGIALGGGAAKGFA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHH
HIGVIKMLEANGLAPAVVAGTSAGSVVGALYASGMNAFELQEKAVALDEAKIRDLQLSSG
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCC
GLVLGQKLEDYVNAQVRNRPIEQLAKPFAAVATRLEDGERTVFTRGNTGQAVRASSSIPG
CEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC
VFQPVAAGKYHFVDGGVVSPVPVDAARQLGADIVVAVDISNKARGQAPADMLGTLGQSIA
CHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
IMGQKLGQAELARADVVVRPQVLDIGAADFTQRAGAILEGEKAALAAMPQIRERVAQLQA
HHHHHCCHHHHHHCCEEECCCEEECCCHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHH
ARAEATRLAQQKAAEAQHQACLEQRSRLQKLAGLAGLDGSCPAAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]